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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacctcaccatctccctcttccgcccccttcgccgccgccgcgcgccgcttggggatttgggtttaatctcatggggggtttgtgattgggcgcagGTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATCGTGCCGAGGCACATCCAGCTGGCGGTGCGCAACGACGAGGAGCTGAGCA

Basic information

species Oryza sativa
transcript LOC_Os12g34510.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g34510.1 (Oryza sativa), 3'ss of exon 1
lower sequence: PP1S188_35V6.1 (Physcomitrella patens), 3'ss of exon 1
---gtaacctcaccatctccctcttccgcccccttcgccgccgccgcgcgccgcttggggatttgggtttaatctcatggggggtttgtgattgggcgcagGTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATCGTGCCGAGGCACATCCAGCTGGCGGTGCGCAACGACGAGGAGCTGAGCA
   ||  |||| |||  |      |    |    ||      |  ||  |  | ||  |    |  ||    | |         |     |||  ||| |||| || |||||||| || || || ||||| |||||||||||||| || ||||| ||  | ||||||||||| |||||||| ||||| |||||||| || |
ttcgtc-cctctccaattgaagtatatttcattctctggaagggtgcaagttggttaagatcgttagtaacgtgtgcctaactttagaacattatgcgtagGTTCTTGAGCTGGCTGGAAATGCTGCGAGAGACAACAAGAAGAATCGTATCGTCCCTCGCCACATCCAGCTAGCGGTGCGAAACGATGAGGAGCTAAGTA

upper sequence: LOC_Os12g34510.1 (Oryza sativa), 3'ss of exon 1
lower sequence: EFJ17602 (Selaginella moellendorffii), 3'ss of exon 1
gtaacctcaccatctccctcttccgcccccttcgccgccgccgcgcgccgcttggggatttgggtttaatctcatggggggtttgtgattgggcgcagGTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATCGTGCCGAGGCACATCCAGCTGGCGGTGCGCAACGACGAGGAGCTGAGCA
           |  | | |    |  | | ||  ||| || | |             || |    | ||||||    ||| |||         | |||||| | ||||| || || ||||| ||| |||| ||||||||||| |||||| | || |||||||||||||| || ||| | |||||||||||||| ||||
--------gtgagattctttgctcatctctttt-ccgtcgtctca------------atct---ctcaatctc----gggatttcgtcccattcccagGTGATCGAGCTCGCTGGAAACGCCGCGCGGGATAACAAGAAGAATCGGATCATCCCCAGGCACATCCAGCTCGCCGTGAGGAACGACGAGGAGCTCAGCA

upper sequence: LOC_Os12g34510.1 (Oryza sativa), 3'ss of exon 1
lower sequence: EFJ31506 (Selaginella moellendorffii), 3'ss of exon 1
gta-acctcaccatctccctcttccgcccccttcgccgccgccgcgcgccgcttgg-ggatttgggtttaatctcatggggggtttgtgattgggcgcagGTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATCGTGCCGAGGCACATCCAGCTGGCGGTGCGCAACGACGAGGAGCTGAGCA
|||    | | | || | |||||  |     |  |   |    ||    |  ||||  ||||   |  |||     | | | | |  | ||    | ||||| ||||||||||| ||||| || ||  | ||||| ||||||||| ||||| | || || ||||| ||||| || ||| | |||||||||||||||||||
gtatgtgtgatcttcgcgctcttgggtt---tagggttcttgggcttttcttttggcagattgaagagtaacgattttgtgtgatgatcatcta-cccagGTCCTGGAGCTGGCCGGGAATGCTGCCCGCGACAATAAGAAGAACAGGATCATCCCCAGACACATACAGCTCGCTGTGAGGAACGACGAGGAGCTGAGCA

upper sequence: LOC_Os12g34510.1 (Oryza sativa), 3'ss of exon 1
lower sequence: EFJ29068 (Selaginella moellendorffii), 3'ss of exon 1
gtaacctcaccatctccctcttccgcccccttcgccgccgccg-cgcgccgcttggggatttgggtttaatctcatggggggtttgtgattgggcgcagGTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATCGTGCCGAGGCACATCCAGCTGGCGGTGCGCAACGACGAGGAGCTGAGCA
           ||      ||     |   |||| || | |   | | | |  | ||||||| |  ||  || |||                  | |||||| | ||||| || || ||||| ||| |||| ||||||||||| |||||| | || |||||||||||||| || ||| | |||||||||||||| ||||
------gtgagattctttgctcgtctctttttcgtcgtctcaatctctcagtctcgggatttcg--ttcgtcccatt-----------------cccagGTGATCGAGCTCGCTGGAAACGCCGCGCGGGATAACAAGAAGAATCGGATCATCCCCAGGCACATCCAGCTCGCCGTGAGGAACGACGAGGAGCTCAGCA

upper sequence: LOC_Os12g34510.1 (Oryza sativa), 3'ss of exon 1
lower sequence: EFJ38642 (Selaginella moellendorffii), 3'ss of exon 1
gta-acctcaccatctccctcttccgcccccttcgccgccgccgcgcgccgcttggggatttgggtttaatctcatggggggtttgtgat--tgggcgcagGTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATCGTGCCGAGGCACATCCAGCTGGCGGTGCGCAACGACGAGGAGCTGAGCA
|||    | | | || | ||| |  |     ||    |     | ||    ||| | |     | |  ||    |  |    | ||||||  |   | ||||| ||||||||||| ||||| || ||  | ||||| ||||||||| ||||| | || || ||||| ||||| || ||| | |||||||||||||||||||
gtatgtgtgatcttcgcgctcatggg-----tttagggttcttgggcttttctttgtggc--agatcgaagagtaacgattttgtgtgatgatctacccagGTCCTGGAGCTGGCCGGGAATGCTGCCCGCGACAATAAGAAGAACAGGATCATCCCCAGACACATACAGCTCGCTGTGAGGAACGACGAGGAGCTGAGCA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87013611|gb|CI269110.1|CI269110
EST:     CGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAG                         GTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
genomic: CGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAGgtaacctcac ... ttgggcgcagGTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
EST: gi|88761418|gb|CI770974.1|CI770974
EST:     CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAG                         GTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
genomic: CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAGgtaacctcac ... ttgggcgcagGTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
EST: gi|14191854|gb|AU184065.1|AU184065
EST:     CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAG                         GTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
genomic: CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAGgtaacctcac ... ttgggcgcagGTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
EST: gi|88968847|gb|CI098944.1|CI098944
EST:     CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAG                         GTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
genomic: CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAGgtaacctcac ... ttgggcgcagGTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
EST: gi|87005150|gb|CI283373.1|CI283373
EST:     CGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAG                         GTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
genomic: CGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAGgtaacctcac ... ttgggcgcagGTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
EST: gi|88739487|gb|CI762995.1|CI762995
EST:     CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAG                         GTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
genomic: CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAGgtaacctcac ... ttgggcgcagGTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
EST: gi|88851669|gb|CI674871.1|CI674871
EST:     CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAG                         GTGCTGGAGCTGGCGGGGAACGCGGNGAGGGACAACAAGAAGAACCGGATC
genomic: CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAGgtaacctcac ... ttgggcgcagGTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
EST: gi|88723355|gb|CI746865.1|CI746865
EST:     CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAG                         GTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
genomic: CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAGgtaacctcac ... ttgggcgcagGTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
EST: gi|87023542|gb|CI284689.1|CI284689
EST:     CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAG                         GTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
genomic: CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAGgtaacctcac ... ttgggcgcagGTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
EST: gi|88332338|gb|CI656207.1|CI656207
EST:     CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAG                         GTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
genomic: CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAGgtaacctcac ... ttgggcgcagGTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
EST: gi|86527007|gb|CI167213.1|CI167213
EST:     GTACCTCGCCGCCGAG                         GTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
genomic: GTACCTCGCCGCCGAGgtaacctcac ... ttgggcgcagGTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
EST: gi|88212549|gb|CI212189.1|CI212189
EST:     CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAG                         GTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
genomic: CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAGgtaacctcac ... ttgggcgcagGTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
EST: gi|88242862|gb|CI240713.1|CI240713
EST:     CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAG                         GTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
genomic: CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAGgtaacctcac ... ttgggcgcagGTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
EST: gi|58683167|gb|CK071854.1|CK071854
EST:     TACCTCGCCGCCGAG                         GTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
genomic: TACCTCGCCGCCGAGgtaacctcac ... ttgggcgcagGTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
EST: gi|88765485|gb|CI774579.1|CI774579
EST:     CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAG                         GTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
genomic: CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAGgtaacctcac ... ttgggcgcagGTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
EST: gi|88544956|gb|CI472483.1|CI472483
EST:     TCCTCGAGTACCTCGCCGCCGAG                         GTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
genomic: TCCTCGAGTACCTCGCCGCCGAGgtaacctcac ... ttgggcgcagGTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
EST: gi|88723881|gb|CI745578.1|CI745578
EST:     CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAG                         GTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCG
genomic: CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAGgtaacctcac ... ttgggcgcagGTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCG
EST: gi|88571447|gb|CI662820.1|CI662820
EST:     CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAG                         GTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
genomic: CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAGgtaacctcac ... ttgggcgcagGTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
EST: gi|11171484|gb|AU163812.1|AU163812
EST:     CCGGCGCCCCCGTCTACCTNTCCGCCGTCCTCGAGTACCTCGCCGCCNAG                         GTGCTGGAGCTGGCGGGGAACGCGGCGAGGGNCACCAAGAAGAACCGGATC
genomic: CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAGgtaacctcac ... ttgggcgcagGTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
EST: gi|88310877|gb|CI659480.1|CI659480
EST:     CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAG                         GTGCTGGAGCTGGCGGGGAACGCGGCGAGGGANAACAAGAAGAACCGGATC
genomic: CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAGgtaacctcac ... ttgggcgcagGTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
EST: gi|286863|gb|D15670.1|D15670
EST:     CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAG                         GTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
genomic: CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAGgtaacctcac ... ttgggcgcagGTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
EST: gi|87008119|gb|CI299087.1|CI299087
EST:     CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAG                         GTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
genomic: CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAGgtaacctcac ... ttgggcgcagGTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
EST: gi|89165171|gb|CI255228.1|CI255228
EST:     GGCGNNNNNNNGTGTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAG                         GTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
genomic: GGCG--CCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAGgtaacctcac ... ttgggcgcagGTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
EST: gi|88544955|gb|CI472482.1|CI472482
EST:     CTACCTCTCCCCCGTCCTCGAGTACCTCGCCGCCGAG                         TTGCTGGAGCTGGCGGGGAACNCGGCGAGGGACAACAAGAAGAACCGGATC
genomic: CTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAGgtaacctcac ... ttgggcgcagGTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
EST: gi|88743127|gb|CI766635.1|CI766635
EST:     CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAG                         GTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
genomic: CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAGgtaacctcac ... ttgggcgcagGTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
EST: gi|95101572|gb|CI697092.1|CI697092
EST:     CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAG                         GTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
genomic: CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAGgtaacctcac ... ttgggcgcagGTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
EST: gi|88209371|gb|CI209220.1|CI209220
EST:     CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACTTCGCCGCCGAG                         GTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
genomic: CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAGgtaacctcac ... ttgggcgcagGTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
EST: gi|88375443|gb|CI681215.1|CI681215
EST:     CGGCGCCCCCGTCTACCTCTCCGCCCGTC-TCGAGTACCT-GCCGCCGAG                         GTGCTGGAGCCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGAT
genomic: CGGCGCCCCCGTCTACCTCTCCGCC-GTCCTCGAGTACCTCGCCGCCGAGgtaacctcac ... ttgggcgcagGTGCTGGAGC-TGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGAT
EST: gi|88744412|gb|CI767772.1|CI767772
EST:     CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAG                         GTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
genomic: CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAGgtaacctcac ... ttgggcgcagGTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
EST: gi|56158481|gb|AU088594.2|AU088594
EST:     CCGGCGCCCCCGTCTACNTCTCCGCCGTCCTCGAGTACNTCGCCGCCGAG                         GTGCTGGAGCTGGCGGGGAACGCGGCGANGGACAACAAGAAGAACCGGATC
genomic: CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAGgtaacctcac ... ttgggcgcagGTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
EST: gi|88588577|gb|CI706404.1|CI706404
EST:     CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAG                         GTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
genomic: CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAGgtaacctcac ... ttgggcgcagGTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
EST: gi|95101443|gb|CI693191.1|CI693191
EST:     CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAG                         GTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
genomic: CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAGgtaacctcac ... ttgggcgcagGTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
EST: gi|88238563|gb|CI238412.1|CI238412
EST:     TCTCCGCCGTCCTCGAGTACCTCGCCGCCGAG                         GTGCTGGTGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
genomic: TCTCCGCCGTCCTCGAGTACCTCGCCGCCGAGgtaacctcac ... ttgggcgcagGTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
EST: gi|88422902|gb|CI615202.1|CI615202
EST:     CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAG                         GTGCTGGAGGTGGCGGGGAATGGGGGGAGGGACAACAAGAAGAATCGGATC
genomic: CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAGgtaacctcac ... ttgggcgcagGTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
EST: gi|86824587|gb|CI264917.1|CI264917
EST:     CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAG                         GTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
genomic: CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAGgtaacctcac ... ttgggcgcagGTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
EST: gi|87030494|gb|CI254923.1|CI254923
EST:     CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAG                         GTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
genomic: CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAGgtaacctcac ... ttgggcgcagGTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
EST: gi|86254558|gb|CI059285.1|CI059285
EST:     TCTCCGCCGTCCTCGAGTACCTCGCCGCCGAG                         GTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
genomic: TCTCCGCCGTCCTCGAGTACCTCGCCGCCGAGgtaacctcac ... ttgggcgcagGTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
EST: gi|88237626|gb|CI237475.1|CI237475
EST:     CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAG                         GTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
genomic: CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAGgtaacctcac ... ttgggcgcagGTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
EST: gi|95101441|gb|CI693189.1|CI693189
EST:     CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAG                         GTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
genomic: CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAGgtaacctcac ... ttgggcgcagGTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
EST: gi|88726922|gb|CI750577.1|CI750577
EST:     CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAG                         GTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
genomic: CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAGgtaacctcac ... ttgggcgcagGTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
EST: gi|88420874|gb|CI620192.1|CI620192
EST:     CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAG                         GTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGGTC
genomic: CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAGgtaacctcac ... ttgggcgcagGTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
EST: gi|88988076|gb|CI036046.1|CI036046
EST:     TCCGCCGTCCTCGAGTACCTCGCCGCCGAG                         GTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
genomic: TCCGCCGTCCTCGAGTACCTCGCCGCCGAGgtaacctcac ... ttgggcgcagGTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
EST: gi|88381674|gb|CI682344.1|CI682344
EST:     CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAG                         GTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
genomic: CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAGgtaacctcac ... ttgggcgcagGTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
EST: gi|88964672|gb|CI070018.1|CI070018
EST:     CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAG                         GTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
genomic: CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAGgtaacctcac ... ttgggcgcagGTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
EST: gi|88210801|gb|CI209077.1|CI209077
EST:     CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAG                         GTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
genomic: CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAGgtaacctcac ... ttgggcgcagGTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
EST: gi|88733818|gb|CI755404.1|CI755404
EST:     CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAG                         GTGCTGGAGCTGGCGGGGAACGCGGCGAAGGAC
genomic: CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAGgtaacctcac ... ttgggcgcagGTGCTGGAGCTGGCGGGGAACGCGGCGAGGGAC
EST: gi|88590596|gb|CI708373.1|CI708373
EST:     CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAG                         GTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
genomic: CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAGgtaacctcac ... ttgggcgcagGTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
EST: gi|88533375|gb|CI460927.1|CI460927
EST:     TACCTCNCCGCCGAG                         GTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
genomic: TACCTCGCCGCCGAGgtaacctcac ... ttgggcgcagGTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
EST: gi|88206008|gb|CI205857.1|CI205857
EST:     CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCGGCCGAG                         GTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
genomic: CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAGgtaacctcac ... ttgggcgcagGTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
EST: gi|88240822|gb|CI238673.1|CI238673
EST:     CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAG                         GTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
genomic: CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAGgtaacctcac ... ttgggcgcagGTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
EST: gi|86501957|gb|CI144590.1|CI144590
EST:     CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAG                         GTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
genomic: CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAGgtaacctcac ... ttgggcgcagGTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
EST: gi|88341666|gb|CI641418.1|CI641418
EST:     CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAG                         GTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAANAAGAAGAACCGGATC
genomic: CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAGgtaacctcac ... ttgggcgcagGTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
EST: gi|86529642|gb|CI169848.1|CI169848
EST:     CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAG                         GTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
genomic: CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAGgtaacctcac ... ttgggcgcagGTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
EST: gi|8528023|gb|AU092838.1|AU092838
EST:     CGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAAG                         GTNCTGGAGCTGNCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGAT
genomic: CGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCG-AGgtaacctcac ... ttgggcgcagGTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGAT
EST: gi|88316089|gb|CI620367.1|CI620367
EST:     CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAG                         GTGCTGGAGCTGGCGGGGAAAGCGGCGAGGGACAAAAAGAAGAACCGGATC
genomic: CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAGgtaacctcac ... ttgggcgcagGTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
EST: gi|87030498|gb|CI254927.1|CI254927
EST:     CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAG                         GTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
genomic: CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAGgtaacctcac ... ttgggcgcagGTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
EST: gi|88237766|gb|CI237615.1|CI237615
EST:     CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAG                         GTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
genomic: CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAGgtaacctcac ... ttgggcgcagGTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
EST: gi|88742878|gb|CI766386.1|CI766386
EST:     CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAG                         GTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
genomic: CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAGgtaacctcac ... ttgggcgcagGTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC
EST: gi|88740132|gb|CI763640.1|CI763640
EST:     CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAG                         GTGCTGGAGCTGGCGGGGAACGCGGCGAAGGACAACAAGAAGAACCGGATC
genomic: CCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAGgtaacctcac ... ttgggcgcagGTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 70 (upstream exon), 13 (downstream exon)
Score: 4

CCGCATCGCCAGGTACCTCAAGGCCGGCAAGTACGCCGAGCGCGTCGGCGCCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAGgtaacctcac ... ttgggcgcagGTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATCGTGCCGAGGCACATCCAGCTGGCGGTGCGCAACGACGAGGAGCTGAGCA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgcgccgcttggggatttgggtttaatctcatggggggtttgtgattgggcgcagGTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATCGTGCCGAGGCACATCCAGCTGGCGGTGCGCAACGACGAGGAGCTGAGCA
                    gtttaat  putative branch site (score: 4)
                     tttaatct  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaacctcaccatctccctcttccgcccccttcgccgccgccgcgcgccgcttggggatttgggtttaatctcatggggggtttgtgattgggcgcagGTGCTGGAGCTGGCGGGGAACGCGGCGAGGGACAACAAGAAGAACCGGATCGTGCCGAGGCACATCCAGCTGGCGGTGCGCAACGACGAGGAGCTGAGCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA