1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...actgcaagatcttgaaacttcttgatgattcaatccaaatgagtagcagctcaaccctcttacatgatgaaaaaatgtgttttattttattttttgtcagGTTTTTGAAGGCCCCCTTGTGAATTCCCTGTTGTCCATCAGACAAGGAGGCCTCAAGATGTACATCATAGAGGACAAAGGGGGTGCCATTGCCCTCATGC
species | Oryza sativa |
transcript | LOC_Os12g31850.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTGCCACTTCTTTGGTTTCATGCCAAAAG GTTTTTGGAGGCCCCCTTGTGAATTCCCTGTTGTCCATCAGACTAGGAGGCEST: gi|571651|gb|D41162.1|D41162
genomic: GTGCCACTTCTTTGGTTTCATGCCAAAAGgtactctgct ... tttttgtcagGTTTTTGAAGGCCCCCTTGTGAATTCCCTGTTGTCCATCAGACAAGGAGGC
EST: CCATGGACCATGTCCTTGGTTGTGCCACTTCTTTGGTTTCATGCCAAAAG GTTTTTGAAGGCCCCCTTGTGAATTCCCTGTTGTCCATCAGACAAGGAGGCEST: gi|33663043|gb|CF294010.1|CF294010
genomic: CCATGGACCATGTCCTTGGTTGTGCCACTTCTTTGGTTTCATGCCAAAAGgtactctgct ... tttttgtcagGTTTTTGAAGGCCCCCTTGTGAATTCCCTGTTGTCCATCAGACAAGGAGGC
EST: CCATGGACCATGTCCTTGGTTGTGCCACTTCTTTGGTTTCATGCCAAAAG GTTTTTGAAGGCCCCCTTGTGAATTCCCTGTTGTCCATCAGACAAGGAGGCEST: gi|570022|gb|D40871.1|D40871
genomic: CCATGGACCATGTCCTTGGTTGTGCCACTTCTTTGGTTTCATGCCAAAAGgtactctgct ... tttttgtcagGTTTTTGAAGGCCCCCTTGTGAATTCCCTGTTGTCCATCAGACAAGGAGGC
EST: CCATGGACCATGTCCTTGGTTGTGCCACTTCTTTGGTTTCATGCCAAAAG GTTTTTGAAGGCCCCCTTGTGAATTCCCTGTTGTCCATCAGACAAGGAGGCEST: gi|86826073|gb|CI310964.1|CI310964
genomic: CCATGGACCATGTCCTTGGTTGTGCCACTTCTTTGGTTTCATGCCAAAAGgtactctgct ... tttttgtcagGTTTTTGAAGGCCCCCTTGTGAATTCCCTGTTGTCCATCAGACAAGGAGGC
EST: GTGCCACTTCTTTGGTTTCATGCCAAAAG GTTTTTGAAGGCCCCCTTGTGAATTCCCTGTTGTCCATCAGACAAGGAGGCEST: gi|88372698|gb|CI612626.1|CI612626
genomic: GTGCCACTTCTTTGGTTTCATGCCAAAAGgtactctgct ... tttttgtcagGTTTTTGAAGGCCCCCTTGTGAATTCCCTGTTGTCCATCAGACAAGGAGGC
EST: GTGCCACTTCTTTTGGTTTCATGCCAAAAG GTTTTTGAATGGCCCCCTTGTGAATTCCCTGTTGTCCATCAGACAATGAGGEST: gi|86888337|gb|CI303619.1|CI303619
genomic: GTGCCACTTC-TTTGGTTTCATGCCAAAAGgtactctgct ... tttttgtcagGTTTTTGAA-GGCCCCCTTGTGAATTCCCTGTTGTCCATCAGACAAGGAGG
EST: GTGCCACTTCTTTGGTTTCATGCCAAAAG GTTTTTGAAGGCCCCCTTGTGAATTCCCTGTTGTCCATCAGACAAGGAGGCEST: gi|87017707|gb|CI289840.1|CI289840
genomic: GTGCCACTTCTTTGGTTTCATGCCAAAAGgtactctgct ... tttttgtcagGTTTTTGAAGGCCCCCTTGTGAATTCCCTGTTGTCCATCAGACAAGGAGGC
EST: GTGCCACTTCTTTGGTTTCATGCCAAAAG GTTTTTGAAGGCCCCCTTGTGAATTCCCTGTTGTCCATCAGACAAGGAGGCEST: gi|86904085|gb|CI304519.1|CI304519
genomic: GTGCCACTTCTTTGGTTTCATGCCAAAAGgtactctgct ... tttttgtcagGTTTTTGAAGGCCCCCTTGTGAATTCCCTGTTGTCCATCAGACAAGGAGGC
EST: GTGCCACTTCTTTGGTTTCATGCCAAAAG GTTTTTGAAGGCCCCCTTGTGAATTCCCTGTTGTCCATCAGACAAGGAGGCEST: gi|86888374|gb|CI303656.1|CI303656
genomic: GTGCCACTTCTTTGGTTTCATGCCAAAAGgtactctgct ... tttttgtcagGTTTTTGAAGGCCCCCTTGTGAATTCCCTGTTGTCCATCAGACAAGGAGGC
EST: GTGCCACTTCTTTGGTTTCATGCCAAAAG GTTTTTGAAGGCCCCCTTGTGAATTCCCTGTTGTCCATCAGACAAGGAGGCEST: gi|88736973|gb|CI760481.1|CI760481
genomic: GTGCCACTTCTTTGGTTTCATGCCAAAAGgtactctgct ... tttttgtcagGTTTTTGAAGGCCCCCTTGTGAATTCCCTGTTGTCCATCAGACAAGGAGGC
EST: GTGCCACTTCTTTGGTTTCATGCCAAAAG GTTTTTGAAGGCCCCCTTGTGAATTCCCTGTTGTCCATCAGACAAGGAGGCEST: gi|86891687|gb|CI309971.1|CI309971
genomic: GTGCCACTTCTTTGGTTTCATGCCAAAAGgtactctgct ... tttttgtcagGTTTTTGAAGGCCCCCTTGTGAATTCCCTGTTGTCCATCAGACAAGGAGGC
EST: GTGCCACTTCTTTGGTTTCATGCCAAAAG GTTTTTGAAGGCCCCCTTGTGAATTCCCTGTTGTCCATCAGACAAGGAGGCEST: gi|87004914|gb|CI308790.1|CI308790
genomic: GTGCCACTTCTTTGGTTTCATGCCAAAAGgtactctgct ... tttttgtcagGTTTTTGAAGGCCCCCTTGTGAATTCCCTGTTGTCCATCAGACAAGGAGGC
EST: GTGCCACTTCTTTGGTTTCATGCCAAAAG GTTTTTGAAGGCCCCCTTGTGAATTCCCTGTTGTCCATCAGACAAGGAGGCEST: gi|86905004|gb|CI289151.1|CI289151
genomic: GTGCCACTTCTTTGGTTTCATGCCAAAAGgtactctgct ... tttttgtcagGTTTTTGAAGGCCCCCTTGTGAATTCCCTGTTGTCCATCAGACAAGGAGGC
EST: GTGCCACTTCTTTGGTTTCATGCCAAAAG GTTTTTGAAGGCCCCCTTGTGAATTCCCTGTTGTCCATCAGACAAGGAGGCEST: gi|86900768|gb|CI302185.1|CI302185
genomic: GTGCCACTTCTTTGGTTTCATGCCAAAAGgtactctgct ... tttttgtcagGTTTTTGAAGGCCCCCTTGTGAATTCCCTGTTGTCCATCAGACAAGGAGGC
EST: GTGCCACTTCTTTGGTTTCATGCCAAAAG GTTTTTGAAGGCCCCCTTGTGAATTCCCTGTTGTCCATCAGACAAGGAGGCEST: gi|88717706|gb|CI741216.1|CI741216
genomic: GTGCCACTTCTTTGGTTTCATGCCAAAAGgtactctgct ... tttttgtcagGTTTTTGAAGGCCCCCTTGTGAATTCCCTGTTGTCCATCAGACAAGGAGGC
EST: CCATGGACCATGTCCTTGGTTGTGCCACTTCTTTGGTTTCATGCCAAAAG GTTTTTGAAGGCCCCCTTGTGAATTCCCTGTTGTCCATCAGACAAGGAGGCEST: gi|88308904|gb|CI654187.1|CI654187
genomic: CCATGGACCATGTCCTTGGTTGTGCCACTTCTTTGGTTTCATGCCAAAAGgtactctgct ... tttttgtcagGTTTTTGAAGGCCCCCTTGTGAATTCCCTGTTGTCCATCAGACAAGGAGGC
EST: GTGCCACTTCTTTGGTTTCATGCCAAAAG GTTTTTGAAGGCCCCCTTGTGAATTCCCTGTTGTCCATCAGACAAGGAGGCEST: gi|88443662|gb|CI591887.1|CI591887
genomic: GTGCCACTTCTTTGGTTTCATGCCAAAAGgtactctgct ... tttttgtcagGTTTTTGAAGGCCCCCTTGTGAATTCCCTGTTGTCCATCAGACAAGGAGGC
EST: TGTGCCACTTCTTTGGTTTCATGCCAAAAG GTTTTTGAAGGCCCCCTTGTGAATTCCCTGTTGTCCATCAGACAAGGAGGCEST: gi|86909428|gb|CI304662.1|CI304662
genomic: TGTGCCACTTCTTTGGTTTCATGCCAAAAGgtactctgct ... tttttgtcagGTTTTTGAAGGCCCCCTTGTGAATTCCCTGTTGTCCATCAGACAAGGAGGC
EST: GTGCCACTTCTTTGGTTTCATGCCAAAAG GTTTTTGAAGGCCCCCTTGTGAATTCCCTGTTGTCCATCAGACAAGGAGGCEST: gi|88370348|gb|CI587738.1|CI587738
genomic: GTGCCACTTCTTTGGTTTCATGCCAAAAGgtactctgct ... tttttgtcagGTTTTTGAAGGCCCCCTTGTGAATTCCCTGTTGTCCATCAGACAAGGAGGC
EST: CCATGGACCATGTCCTTGGTTGTGCCACTTCTTTGGTTTCATGCCAAAAG GTTTTTGAAGGCCCCCTTGTGAATTCCCTGTTGTCCATCAGACAAGGAGGCEST: gi|88765956|gb|CI775046.1|CI775046
genomic: CCATGGACCATGTCCTTGGTTGTGCCACTTCTTTGGTTTCATGCCAAAAGgtactctgct ... tttttgtcagGTTTTTGAAGGCCCCCTTGTGAATTCCCTGTTGTCCATCAGACAAGGAGGC
EST: GTGCCACTTCTTTGGTTTCATGCCAAAAG GTTTTTGAAGGCCCCCTTGTGAATTCCCTGTTGTCCATCAGACAAGGAGGCEST: gi|88724600|gb|CI747859.1|CI747859
genomic: GTGCCACTTCTTTGGTTTCATGCCAAAAGgtactctgct ... tttttgtcagGTTTTTGAAGGCCCCCTTGTGAATTCCCTGTTGTCCATCAGACAAGGAGGC
EST: CCATGGACCATGTCCTTGGTTGTGCCACTTCTTTGGTTTCATGCCAAAAG GTTTTTGAAGGCCCCCTTGTGAATTCCCTGTTGTCCATCAGACAAGGAGGCEST: gi|88826059|gb|CI776624.1|CI776624
genomic: CCATGGACCATGTCCTTGGTTGTGCCACTTCTTTGGTTTCATGCCAAAAGgtactctgct ... tttttgtcagGTTTTTGAAGGCCCCCTTGTGAATTCCCTGTTGTCCATCAGACAAGGAGGC
EST: GTGCCACTTCTTTGGTTTCATGCCAAAAG GTTTTTGAAGGCCCCCTTGTGAATTCCCTGTTGTCCATCAGACAAGGAGGCEST: gi|86888306|gb|CI301998.1|CI301998
genomic: GTGCCACTTCTTTGGTTTCATGCCAAAAGgtactctgct ... tttttgtcagGTTTTTGAAGGCCCCCTTGTGAATTCCCTGTTGTCCATCAGACAAGGAGGC
EST: GTGCCACTTCTTTGGTTTCATGCCAAAAG GTTTTTGAAGGCCCCCTTGTGAATTCCCTGTTTTCCATCAGACAAGGAGGC
genomic: GTGCCACTTCTTTGGTTTCATGCCAAAAGgtactctgct ... tttttgtcagGTTTTTGAAGGCCCCCTTGTGAATTCCCTGTTGTCCATCAGACAAGGAGGC
gcagctcaaccctcttacatgatgaaaaaatgtgttttattttattttttgtcagGTTTTTGAAGGCCCCCTTGTGAATTCCCTGTTGTCCATCAGACAAGGAGGCCTCAAGATGTACATCATAGAGGACAAAGGGGGTGCCATTGCCCTCATGC
ctcttac putative branch site (score: 3)
ttttattttatttttt putative PPT
ttacatgatgaaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actgcaagatcttgaaacttcttgatgattcaatccaaatgagtagcagctcaaccctcttacatgatgaaaaaatgtgttttattttattttttgtcagGTTTTTGAAGGCCCCCTTGTGAATTCCCTGTTGTCCATCAGACAAGGAGGCCTCAAGATGTACATCATAGAGGACAAAGGGGGTGCCATTGCCCTCATGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA