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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attgattgttataccttccaaagaataatacattgttagttacttctttgtaagccctgatattcaagatcattcattcatttaatttgtttgcatgtagCCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTA

Basic information

species Oryza sativa
transcript LOC_Os12g26290.6
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88372996|gb|CI640447.1|CI640447
EST:     TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAG                         CCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGCGATG
genomic: TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAGgtaattaagc ... ttgcatgtagCCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
EST: gi|29625915|gb|CB630926.1|CB630926
EST:     TCTGAGATCGAGCTCAGC---ACATCTCCAGGTTTTTCTTCTGCCAGCAG                         CCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
genomic: TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAGgtaattaagc ... ttgcatgtagCCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
EST: gi|29673746|gb|CB670021.1|CB670021
EST:     TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCT-------G                         CCA---G--CAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
genomic: TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAGgtaattaagc ... ttgcatgtagCCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
EST: gi|88406507|gb|CI599000.1|CI599000
EST:     TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAG                         CCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
genomic: TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAGgtaattaagc ... ttgcatgtagCCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
EST: gi|29627764|gb|CB632775.1|CB632775
EST:     TCTGAGATCGAGCTCAGC---ACATCTCCAGGTTTTTCTTCTGCCAGCAG                         CCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
genomic: TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAGgtaattaagc ... ttgcatgtagCCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
EST: gi|29673709|gb|CB669984.1|CB669984
EST:     TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCT-------G                         CCA---G--CAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
genomic: TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAGgtaattaagc ... ttgcatgtagCCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
EST: gi|88326464|gb|CI659896.1|CI659896
EST:     TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAG                         CCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
genomic: TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAGgtaattaagc ... ttgcatgtagCCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
EST: gi|33676616|gb|CF304855.1|CF304855
EST:     TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAG                         CCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
genomic: TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAGgtaattaagc ... ttgcatgtagCCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
EST: gi|29623660|gb|CB628671.1|CB628671
EST:     TCTGAGATCGAGCTCAGC---ACATCTCCAGGTTTTTCTTCTGCCAGCAG                         CCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
genomic: TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAGgtaattaagc ... ttgcatgtagCCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
EST: gi|29626272|gb|CB631283.1|CB631283
EST:     TCTGAGATCGAGCTCAGC---ACATCTCCAGGTTTTTCTTCTGCCAGCAG                         CCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
genomic: TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAGgtaattaagc ... ttgcatgtagCCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
EST: gi|29622413|gb|CB627424.1|CB627424
EST:     TCTGAGATCGAGCTCAGC---ACATCTCCAGGTTTTTCTTCTGCCAGCAG                         CCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
genomic: TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAGgtaattaagc ... ttgcatgtagCCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
EST: gi|88367577|gb|CI568349.1|CI568349
EST:     TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAG                         CCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
genomic: TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAGgtaattaagc ... ttgcatgtagCCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
EST: gi|29674051|gb|CB670326.1|CB670326
EST:     TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAG                         CCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
genomic: TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAGgtaattaagc ... ttgcatgtagCCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
EST: gi|29622490|gb|CB627501.1|CB627501
EST:     TCTGAGATCGAGCTCAGC---ACATCTCCAGGTTTTTCTTCTGCCAGCAG                         CCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
genomic: TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAGgtaattaagc ... ttgcatgtagCCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
EST: gi|88327757|gb|CI657801.1|CI657801
EST:     TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAG                         CCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
genomic: TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAGgtaattaagc ... ttgcatgtagCCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
EST: gi|88342941|gb|CI640274.1|CI640274
EST:     TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAG                         CCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
genomic: TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAGgtaattaagc ... ttgcatgtagCCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
EST: gi|88349484|gb|CI653763.1|CI653763
EST:     TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAG                         CCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
genomic: TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAGgtaattaagc ... ttgcatgtagCCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
EST: gi|88571735|gb|CI663108.1|CI663108
EST:     TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAG                         CCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
genomic: TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAGgtaattaagc ... ttgcatgtagCCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
EST: gi|29625519|gb|CB630530.1|CB630530
EST:     TCTGAGATCGAGCTCAGC---ACATCTCCAGGTTTTTCTTCTGCCAGCAG                         CCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
genomic: TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAGgtaattaagc ... ttgcatgtagCCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
EST: gi|88325711|gb|CI648155.1|CI648155
EST:     TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAG                         CCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
genomic: TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAGgtaattaagc ... ttgcatgtagCCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
EST: gi|33675485|gb|CF303724.1|CF303724
EST:     TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAG                         CCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
genomic: TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAGgtaattaagc ... ttgcatgtagCCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
EST: gi|29625911|gb|CB630922.1|CB630922
EST:     TCTGAGATCGAGCTCAGC---ACATCTCCAGGTTTTTCTTCTGCCAGCAG                         CCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
genomic: TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAGgtaattaagc ... ttgcatgtagCCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
EST: gi|29625830|gb|CB630841.1|CB630841
EST:     TCTGAGATCGAGCTCAGC---ACATCTCCAGGTTTTTCTTCTGCCAGCAG                         CCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
genomic: TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAGgtaattaagc ... ttgcatgtagCCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
EST: gi|88337257|gb|CI629547.1|CI629547
EST:     TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAG                         CCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
genomic: TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAGgtaattaagc ... ttgcatgtagCCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
EST: gi|29626293|gb|CB631304.1|CB631304
EST:     TCTGAGATCGAGCTCAGC---ACATCTCCAGGTTTTTCTTCTGCCAGCAG                         CCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
genomic: TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAGgtaattaagc ... ttgcatgtagCCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
EST: gi|29679634|gb|CB675909.1|CB675909
EST:     TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAG                         CCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
genomic: TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAGgtaattaagc ... ttgcatgtagCCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
EST: gi|29623589|gb|CB628600.1|CB628600
EST:     TCTGAGATCGAGCTCAGC---ACATCTCCAGGTTTTTCTTCTGCCAGCAG                         CCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
genomic: TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAGgtaattaagc ... ttgcatgtagCCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
EST: gi|33675576|gb|CF303815.1|CF303815
EST:     TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAG                         CCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
genomic: TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAGgtaattaagc ... ttgcatgtagCCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
EST: gi|88347126|gb|CI631206.1|CI631206
EST:     TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAG                         CCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
genomic: TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAGgtaattaagc ... ttgcatgtagCCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
EST: gi|88347940|gb|CI636033.1|CI636033
EST:     TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAG                         CCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
genomic: TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAGgtaattaagc ... ttgcatgtagCCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
EST: gi|88303028|gb|CI668874.1|CI668874
EST:     TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAG                         CCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
genomic: TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAGgtaattaagc ... ttgcatgtagCCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
EST: gi|29627804|gb|CB632815.1|CB632815
EST:     TCTGAGATCGAGCTCAGC---ACATCTCCAGGTTTTTCTTCTGCCAGCAG                         CCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
genomic: TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAGgtaattaagc ... ttgcatgtagCCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
EST: gi|88406617|gb|CI599110.1|CI599110
EST:     TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAG                         CCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
genomic: TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAGgtaattaagc ... ttgcatgtagCCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
EST: gi|88385226|gb|CI630327.1|CI630327
EST:     TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAG                         CCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
genomic: TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAGgtaattaagc ... ttgcatgtagCCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
EST: gi|29626125|gb|CB631136.1|CB631136
EST:     TCTGAGATCGAGCTCAGC---ACATCTCCAGGTTTTTCTTCTGCCAGCAG                         CCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
genomic: TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAGgtaattaagc ... ttgcatgtagCCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
EST: gi|88338511|gb|CI645765.1|CI645765
EST:     TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAG                         CCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
genomic: TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAGgtaattaagc ... ttgcatgtagCCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
EST: gi|29628820|gb|CB633831.1|CB633831
EST:     TCTGAGATCGAGCTCAGC---ACATCTCCAGGTTTTTCTTCTGCCAGCAG                         CCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
genomic: TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAGgtaattaagc ... ttgcatgtagCCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
EST: gi|29624043|gb|CB629054.1|CB629054
EST:     TCTGAGATCGAGCTCAGC---ACATCTCCAGGTTTTTCTTCTGCCAGCAG                         CCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
genomic: TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAGgtaattaagc ... ttgcatgtagCCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
EST: gi|29627901|gb|CB632912.1|CB632912
EST:     TCTGAGATCGAGCTCAGC---ACATCTCCAGGTTTTTCTTCTGCCAGCAG                         CCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
genomic: TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAGgtaattaagc ... ttgcatgtagCCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
EST: gi|33675586|gb|CF303825.1|CF303825
EST:     TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAG                         CCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
genomic: TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAGgtaattaagc ... ttgcatgtagCCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
EST: gi|88305364|gb|CI630526.1|CI630526
EST:     TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAG                         CCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
genomic: TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAGgtaattaagc ... ttgcatgtagCCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
EST: gi|29628685|gb|CB633696.1|CB633696
EST:     TCTGAGATCGAGCTCAGC---ACATCTCCAGGTTTTTCTTCTGCCAGCAG                         CCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
genomic: TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAGgtaattaagc ... ttgcatgtagCCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
EST: gi|29628226|gb|CB633237.1|CB633237
EST:     TCTGAGATCGAGCTCAGC---ACATCTCCAGGTTTTTCTTCTGCCAGCAG                         CCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
genomic: TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAGgtaattaagc ... ttgcatgtagCCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
EST: gi|29625787|gb|CB630798.1|CB630798
EST:     TCTGAGATCGAGCTCAGC---ACATCTCCAGGTTTTTCTTCTGCCAGCAG                         CCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
genomic: TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAGgtaattaagc ... ttgcatgtagCCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
EST: gi|29627802|gb|CB632813.1|CB632813
EST:     TCTGAGATCGAGCTCAGC---ACATCTCCAGGTTTTTCTTCTGCCAGCAG                         CCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
genomic: TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAGgtaattaagc ... ttgcatgtagCCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
EST: gi|29623658|gb|CB628669.1|CB628669
EST:     TCTGAGATCGAGCTCAGC---ACATCTCCAGGTTTTTCTTCTGCCAGCAG                         CCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
genomic: TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAGgtaattaagc ... ttgcatgtagCCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
EST: gi|88339870|gb|CI649127.1|CI649127
EST:     TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAG                         CCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
genomic: TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAGgtaattaagc ... ttgcatgtagCCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
EST: gi|29627625|gb|CB632636.1|CB632636
EST:     TCTGAGATCGAGCTCAGC---ACATCTCCAGGTTTTTCTTCTGCCAGCAG                         CCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
genomic: TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAGgtaattaagc ... ttgcatgtagCCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
EST: gi|29623848|gb|CB628859.1|CB628859
EST:     TCTGAGATCGAGCTCAGC---ACATCTCCAGGTTTTTCTTCTGCCAGCAG                         CCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
genomic: TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAGgtaattaagc ... ttgcatgtagCCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
EST: gi|4968860|gb|AU065764.1|AU065764
EST:     TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAG                         CCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
genomic: TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAGgtaattaagc ... ttgcatgtagCCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
EST: gi|29622060|gb|CB627071.1|CB627071
EST:     TCTGAGATCGAGCTCAGC---ACATCTCCAGGTTTTTCTTCTGCCAGCAG                         CCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
genomic: TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAGgtaattaagc ... ttgcatgtagCCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
EST: gi|33675591|gb|CF303830.1|CF303830
EST:     TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAG                         CCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
genomic: TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAGgtaattaagc ... ttgcatgtagCCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
EST: gi|88345083|gb|CI628337.1|CI628337
EST:     TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAG                         CCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
genomic: TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAGgtaattaagc ... ttgcatgtagCCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
EST: gi|88430254|gb|CI567273.1|CI567273
EST:     TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAG                         CCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
genomic: TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAGgtaattaagc ... ttgcatgtagCCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
EST: gi|33676870|gb|CF305109.1|CF305109
EST:     TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAG                         CCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG
genomic: TCTGAGATTGAGCTCAGCAGTACATCTCCAGGTTTTTCTTCTGCCAGCAGgtaattaagc ... ttgcatgtagCCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttgtaagccctgatattcaagatcattcattcatttaatttgtttgcatgtagCCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTA
                                  atttaat  putative branch site (score: 4)
                                        tttgttt  CT-rich tract
                          attcattcatttaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
attgattgttataccttccaaagaataatacattgttagttacttctttgtaagccctgatattcaagatcattcattcatttaatttgtttgcatgtagCCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG