1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gatattgaaatgttgttgcattacggcgcgttgcattttgtacgtctctagtggatgtatgactggttgttgatttggctctgattgttcctttggatagGTGTAACTCCTGATAATTCGACCGCGAATGTGACCGTCGACGAGTACCACCGCTACATG
species | Oryza sativa |
transcript | LOC_Os12g23170.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCAGTATGGCCGAGGGCCCTGCATCTGGGACACCTTCCTGATGCAACCTG GTGTAACTCCTGATAATTCGACCGCGAATGTGACCGTCGACGAGTACCACCEST: gi|88400647|gb|CI596068.1|CI596068
genomic: CCAGTATGGCCGAGGGCCCTGCATCTGGGACACCTTCCTGATGCAACCTGgtgagatcga ... ctttggatagGTGTAACTCCTGATAATTCGACCGCGAATGTGACCGTCGACGAGTACCACC
EST: CCAGTATGGCCGAGGGCCCTGCATCTGGGACACCTTCCTGATGCAACCTG GTGTAACTCCTGATAATTCGACCGCGAATGTGACCGTCGACGAGTACCACCEST: gi|88370897|gb|CI595009.1|CI595009
genomic: CCAGTATGGCCGAGGGCCCTGCATCTGGGACACCTTCCTGATGCAACCTGgtgagatcga ... ctttggatagGTGTAACTCCTGATAATTCGACCGCGAATGTGACCGTCGACGAGTACCACC
EST: CCAGTATGGCCGAGGGCCCTGCATCTGGGACACCTTCCTGATGCAACCTG GTGTAACTCCTGATAATTCGACCGCGAATGTGACCGTCGACGAGTACCACCEST: gi|55409077|gb|CV721453.1|CV721453
genomic: CCAGTATGGCCGAGGGCCCTGCATCTGGGACACCTTCCTGATGCAACCTGgtgagatcga ... ctttggatagGTGTAACTCCTGATAATTCGACCGCGAATGTGACCGTCGACGAGTACCACC
EST: CCAGTATGGCCGAGGGCCCTGCATCTGGGACACCTTCCTGATGCAACCTG GTGTAACTCCTGATAATTCGACCGCGAATGTGACCGTCGACGAGTACCACCEST: gi|88400586|gb|CI596007.1|CI596007
genomic: CCAGTATGGCCGAGGGCCCTGCATCTGGGACACCTTCCTGATGCAACCTGgtgagatcga ... ctttggatagGTGTAACTCCTGATAATTCGACCGCGAATGTGACCGTCGACGAGTACCACC
EST: CCAGTATGGCCGAGGGCCCTGCATCTGGGACACCTTCCTGATGCAACCTG GTGTAACTCCTGATAATTCGACCGCGAATGTGACCGTCGACGAGTACCACC
genomic: CCAGTATGGCCGAGGGCCCTGCATCTGGGACACCTTCCTGATGCAACCTGgtgagatcga ... ctttggatagGTGTAACTCCTGATAATTCGACCGCGAATGTGACCGTCGACGAGTACCACC
ctctagtggatgtatgactggttgttgatttggctctgattgttcctttggatagGTGTAACTCCTGATAATTCGACCGCGAATGTGACCGTCGACGAGTACCACCGCTACATG
ctctgat putative branch site (score: 11)
ttgttccttt CT-rich tract
ttgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatattgaaatgttgttgcattacggcgcgttgcattttgtacgtctctagtggatgtatgactggttgttgatttggctctgattgttcctttggatagGTGTAACTCCTGATAATTCGACCGCGAATGTGACCGTCGACGAGTACCACCGCTACATG
- - - - - - ttgttgc
- - - - - - - -ttgcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - atgtatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgattg