1 5' 3' | 2 5' 3' | 3 5' 3' |
...atgcaatgaatcctatgatactcctgtattcagtcagggccttaaatcttttgaaacatctctttgctataattattactattgacattgacttttgtagGAGGCTGCAAATCCTTTTCAATATTCTGATGTGGTTACCACCACCACCCACAAGAGTCTCCGAGGGCCAAGATCTGGTATGATCTTCTACAGGAAGGGCC
species | Oryza sativa |
transcript | LOC_Os12g22030.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCATGTTGCTCTGCGACATGGCTCACATCAGTGGCCTAGTTGCCGCGCAG GAGGCTGCAAATCCTTTTCAATATTCTGATGTGGTTACCACCACCACCCACEST: gi|218487744|gb|FG962551.1|FG962551
genomic: CCATGTTGCTCTGCGACATGGCTCACATCAGTGGCCTAGTTGCCGCGCAGgtatggaatt ... acttttgtagGAGGCTGCAAATCCTTTTCAATATTCTGATGTGGTTACCACCACCACCCAC
EST: CCATGTTGCTCTGCGACATGGCTCACATCAGTGGCCTAGTTGCCGCGCAG GAGGCTGCAAATCCTTTTCAATATTCTGATGTGGTTACCACCACCACCCACEST: gi|29661231|gb|CB657506.1|CB657506
genomic: CCATGTTGCTCTGCGACATGGCTCACATCAGTGGCCTAGTTGCCGCGCAGgtatggaatt ... acttttgtagGAGGCTGCAAATCCTTTTCAATATTCTGATGTGGTTACCACCACCACCCAC
EST: CCATGTTGCTCTGCGACATGGCTCACATCAGTGGCCTAGTTGCCGCGCAG GAGGCTGCAAATCCTTTTCAATATTCTGATGTGGTTACCACCACCACCCAC
genomic: CCATGTTGCTCTGCGACATGGCTCACATCAGTGGCCTAGTTGCCGCGCAGgtatggaatt ... acttttgtagGAGGCTGCAAATCCTTTTCAATATTCTGATGTGGTTACCACCACCACCCAC
atcttttgaaacatctctttgctataattattactattgacattgacttttgtagGAGGCTGCAAATCCTTTTCAATATTCTGATGTGGTTACCACCACCACCCACAAGAGTCTCCGAGGGCCAAGATCTGGTATGATCTTCTACAGGAAGGGCC
cttttgt CT-rich tract
tataattattactatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgcaatgaatcctatgatactcctgtattcagtcagggccttaaatcttttgaaacatctctttgctataattattactattgacattgacttttgtagGAGGCTGCAAATCCTTTTCAATATTCTGATGTGGTTACCACCACCACCCACAAGAGTCTCCGAGGGCCAAGATCTGGTATGATCTTCTACAGGAAGGGCC
-tgcaatg
- - - - - - - - - - ctcctgt
- - - - - - - - - - - - - - - - - - - - - - - tcttttg