1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...cctgtcaccatcttaattcttaagcaacaaagaacaataggcatgctgcagtagtgattttttgctaataattgttttactggcggtctgcatcgtccagGTGGGCAACCTATCCATAAGCCGGCTGTGCCAACCGGAGATGATCATCACGGCGGTGAACGGGCAGCTCCCCGGCCCGACCATCAACGTCACCGAGGGCG
species | Oryza sativa |
transcript | LOC_Os12g15530.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGGTCATCGCTTCGGTTGCTCATGGCGCTGTTGTGGAGCACACTTTCAAT GTGGGCAACCTATCCGTAAGCCGGCTGTGCCAACCGGAGATGATCATCACGEST: gi|88718583|gb|CI742093.1|CI742093
genomic: TGGTCATCGCTTCGGTTGCTCATGGCGCTGTTGTGGAGCACACTTTCAATgtaagtgtcc ... catcgtccagGTGGGCAACCTATCCATAAGCCGGCTGTGCCAACCGGAGATGATCATCACG
EST: TGGTCATCGCTTCGGTTGCTCATGGCGCCGTTGTGGAGCANACTTTCAAT GTGGGCAANCTATCCATAAGCCGGCTGTGCCAACCGGAGATGATCATCACGEST: gi|88716954|gb|CI740464.1|CI740464
genomic: TGGTCATCGCTTCGGTTGCTCATGGCGCTGTTGTGGAGCACACTTTCAATgtaagtgtcc ... catcgtccagGTGGGCAACCTATCCATAAGCCGGCTGTGCCAACCGGAGATGATCATCACG
EST: TGGTCATCGCTTCGGTTGCTCATGGCGCTGTTGTGGAGCACACTTTCAAT GTGGGCAACCTATCCATAAGCCGGCTGTGCCAACCGGAGATGATCATCACG
genomic: TGGTCATCGCTTCGGTTGCTCATGGCGCTGTTGTGGAGCACACTTTCAATgtaagtgtcc ... catcgtccagGTGGGCAACCTATCCATAAGCCGGCTGTGCCAACCGGAGATGATCATCACG
ctgcagtagtgattttttgctaataattgttttactggcggtctgcatcgtccagGTGGGCAACCTATCCATAAGCCGGCTGTGCCAACCGGAGATGATCATCACGGCGGTGAACGGGCAGCTCCCCGGCCCGACCATCAACGTCACCGAGGGCG
tgctaat putative branch site (score: 3)
attttttgctaataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctgtcaccatcttaattcttaagcaacaaagaacaataggcatgctgcagtagtgattttttgctaataattgttttactggcggtctgcatcgtccagGTGGGCAACCTATCCATAAGCCGGCTGTGCCAACCGGAGATGATCATCACGGCGGTGAACGGGCAGCTCCCCGGCCCGACCATCAACGTCACCGAGGGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - -caccatc
- - - - - - - - - - - - caacaaa
- - - - - - - - - - - - - - - -gaacaat
- - - - - - - - - - - - - - - - - - - -ggcatgc
- - - - - - - - - - - - - - - - - - - - - - - tgcagta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tactggc