1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtacataattcattcatcatttctccttctccatttcatttcatcgtccatggatgagtgttcgattttgtttttttttgtagGGGTCCGGGGGTGGCGGCGATGATCATGTCGTGGGTGATCACGCTGTACACGCTGTGGCAGATGGTGGAGATGCACGAGTGCGTGCCGGGGCGGCGGTTC
species | Oryza sativa |
transcript | LOC_Os12g14100.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTCGGCGCCGGCGTCCTCAGCCTCCCCTTCGCCATGTCCGAGCTCGGCTG GGGTCCGGGGGTGGCGGCGATGATCATGTCGTGGGTGATCACGCTGTACACEST: gi|88415644|gb|CI589236.1|CI589236
genomic: GTCGGCGCCGGCGTCCTCAGCCTCCCCTTCGCCATGTCCGAGCTCGGCTGgtacataatt ... ttttttgtagGGGTCCGGGGGTGGCGGCGATGATCATGTCGTGGGTGATCACGCTGTACAC
EST: GTCGGCGCCGGCGTCCTCAGCCTCCCCTTCGCCATGTCCGAGCTCGGCTG GGGTCCGGGGGTGGCGGCGATGATCATGTCGTGGGTGATCACGCTGTACACEST: gi|88406243|gb|CI596370.1|CI596370
genomic: GTCGGCGCCGGCGTCCTCAGCCTCCCCTTCGCCATGTCCGAGCTCGGCTGgtacataatt ... ttttttgtagGGGTCCGGGGGTGGCGGCGATGATCATGTCGTGGGTGATCACGCTGTACAC
EST: GTCGGCGCCGGCGTCCTCAGCCTCCCCTTCGCCATGTCCGAGCTCGGCTG GGGTCCGGGGGTGGCGGCGATGATCATGTCGTGGGTGATCACGCTGTACACEST: gi|88718590|gb|CI742100.1|CI742100
genomic: GTCGGCGCCGGCGTCCTCAGCCTCCCCTTCGCCATGTCCGAGCTCGGCTGgtacataatt ... ttttttgtagGGGTCCGGGGGTGGCGGCGATGATCATGTCGTGGGTGATCACGCTGTACAC
EST: GTCGGCGCCGGCGTCCTCAGCCTCCCCTTCGCCATGTCCGAGCTCGGCTG GGGTCCGGGGGTGGCGGCGATGATCATGTCGTGGGTGATCACGCTGTACACEST: gi|88731661|gb|CI755274.1|CI755274
genomic: GTCGGCGCCGGCGTCCTCAGCCTCCCCTTCGCCATGTCCGAGCTCGGCTGgtacataatt ... ttttttgtagGGGTCCGGGGGTGGCGGCGATGATCATGTCGTGGGTGATCACGCTGTACAC
EST: GTCGGCGCCGGCGTCCTCAGCCTCCCCTTCGCCATGTCCGAGCTCGGCTG GGGTCCGGGGGTGGCGGCGATGATCATGTCGTGGGTGATCACGCTGTACACEST: gi|88722840|gb|CI746350.1|CI746350
genomic: GTCGGCGCCGGCGTCCTCAGCCTCCCCTTCGCCATGTCCGAGCTCGGCTGgtacataatt ... ttttttgtagGGGTCCGGGGGTGGCGGCGATGATCATGTCGTGGGTGATCACGCTGTACAC
EST: GTCGGCGCCGGCGTCCTCAGCCTCCCCTTCGCCATGTCCGAGCTCGGCTG GGGTCCGGGGGTGGCGGCGATGATCATGTCGTGGGTGATCACGCTGTACACEST: gi|88300892|gb|CI592072.1|CI592072
genomic: GTCGGCGCCGGCGTCCTCAGCCTCCCCTTCGCCATGTCCGAGCTCGGCTGgtacataatt ... ttttttgtagGGGTCCGGGGGTGGCGGCGATGATCATGTCGTGGGTGATCACGCTGTACAC
EST: GTCGGCGCCGGCGTCCTCAGCCTCCCCTTCGCCATGTCCGAGCTCGGCTG GGGTCCGGGGGTGGCGGCGATGATCATGTCGTGGGTGATCACGCTGTACAC
genomic: GTCGGCGCCGGCGTCCTCAGCCTCCCCTTCGCCATGTCCGAGCTCGGCTGgtacataatt ... ttttttgtagGGGTCCGGGGGTGGCGGCGATGATCATGTCGTGGGTGATCACGCTGTACAC
ctccatttcatttcatcgtccatggatgagtgttcgattttgtttttttttgtagGGGTCCGGGGGTGGCGGCGATGATCATGTCGTGGGTGATCACGCTGTACACGCTGTGGCAGATGGTGGAGATGCACGAGTGCGTGCCGGGGCGGCGGTTC
ttttgtttttttttgt CT-rich tract
attttgtttttttttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacataattcattcatcatttctccttctccatttcatttcatcgtccatggatgagtgttcgattttgtttttttttgtagGGGTCCGGGGGTGGCGGCGATGATCATGTCGTGGGTGATCACGCTGTACACGCTGTGGCAGATGGTGGAGATGCACGAGTGCGTGCCGGGGCGGCGGTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG