1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...acacctgaatgctcagggtccataatggcataatgtagcttacattttatttacatagtaaatggattactaaatttcacttttcgggtcaatgcaacagGTCTTGAGGAAGTTGGTGGACGATGCATCTAAGTTTTTGAATGACAAAATTACCAAAGCAGTGGTTACTGTTCCTGCATACTTCAATGACTCACAGAGGA
species | Oryza sativa |
transcript | LOC_Os12g14070.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCCCCGCCATCGGCAAGCAGTTCGCCGCCGAGGAGATTTCCGCGCAG GTCTTGAGGAAGTTGGTGGACGATGCATCTAAGTTTTTGAATGACAAAATTEST: gi|33799830|gb|CF325781.1|CF325781
genomic: GCCCCGCCATCGGCAAGCAGTTCGCCGCCGAGGAGATTTCCGCGCAGgtgatttctt ... aatgcaacagGTCTTGAGGAAGTTGGTGGACGATGCATCTAAGTTTTTGAATGACAAAATT
EST: ACTGCCCCGCCATCGGCAAGCAGTTCGCCGCCGAGGAGATTTCCGCGCAG GTCTTGAGGAAGTTGGTGGACGATGCATCTAAGTTTTTGAATGACAAAATTEST: gi|29614003|gb|CB619016.1|CB619016
genomic: ACTGCCCCGCCATCGGCAAGCAGTTCGCCGCCGAGGAGATTTCCGCGCAGgtgatttctt ... aatgcaacagGTCTTGAGGAAGTTGGTGGACGATGCATCTAAGTTTTTGAATGACAAAATT
EST: ACTGCCCCGCCATCGGCAAGCAGTTCGCCGCCGAGGAGATTTCCGCGCAG GTCTTGAGGAAGTTGGTGGACGATGCATCTAAGTTTTTGAATGACAAAATTEST: gi|13420936|gb|AU175026.1|AU175026
genomic: ACTGCCCCGCCATCGGCAAGCAGTTCGCCGCCGAGGAGATTTCCGCGCAGgtgatttctt ... aatgcaacagGTCTTGAGGAAGTTGGTGGACGATGCATCTAAGTTTTTGAATGACAAAATT
EST: ACTGCCCCGCCATCGGCAAGCAGTTCGCCGCCGAGGAGATTTCCGCGCAG GTCTTGAGGAAGTTGGTGGACGATGCATCTAAGTTTTTGAATGACAAAATTEST: gi|29636280|gb|CB641289.1|CB641289
genomic: ACTGCCCCGCCATCGGCAAGCAGTTCGCCGCCGAGGAGATTTCCGCGCAGgtgatttctt ... aatgcaacagGTCTTGAGGAAGTTGGTGGACGATGCATCTAAGTTTTTGAATGACAAAATT
EST: ACTGCCCCGCCATCGGCAAGCAGTTCGCCGCCGAGGAGATTTCCGCGCAG GTCTTGAGGAAGTTGGTGGACGATGCATCTAAGTTTTTGAATGACAAAATTEST: gi|29613315|gb|CB618328.1|CB618328
genomic: ACTGCCCCGCCATCGGCAAGCAGTTCGCCGCCGAGGAGATTTCCGCGCAGgtgatttctt ... aatgcaacagGTCTTGAGGAAGTTGGTGGACGATGCATCTAAGTTTTTGAATGACAAAATT
EST: ACTGCCCCGCCATCGGCAAGCAGTTCGCCGCCGAGGAGATTTCCGCGCAG GTCTTGAGGAAGTTGGTGGACGATGCATCTAAGTTTTTGAATGACAAAATTEST: gi|29631733|gb|CB636742.1|CB636742
genomic: ACTGCCCCGCCATCGGCAAGCAGTTCGCCGCCGAGGAGATTTCCGCGCAGgtgatttctt ... aatgcaacagGTCTTGAGGAAGTTGGTGGACGATGCATCTAAGTTTTTGAATGACAAAATT
EST: ACTGCCCCGCCATCGGCAAGCAGTTCGCCGCCGAGGAGATTTCCGCGCAG GTCTTGAGGAAGTTGGTGGACGATGCATCTAATTTTTTGAATGACAAAATT
genomic: ACTGCCCCGCCATCGGCAAGCAGTTCGCCGCCGAGGAGATTTCCGCGCAGgtgatttctt ... aatgcaacagGTCTTGAGGAAGTTGGTGGACGATGCATCTAAGTTTTTGAATGACAAAATT
tttatttacatagtaaatggattactaaatttcacttttcgggtcaatgcaacagGTCTTGAGGAAGTTGGTGGACGATGCATCTAAGTTTTTGAATGACAAAATTACCAAAGCAGTGGTTACTGTTCCTGCATACTTCAATGACTCACAGAGGA
tactaaa putative branch site (score: 193)
attactaaatttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acacctgaatgctcagggtccataatggcataatgtagcttacattttatttacatagtaaatggattactaaatttcacttttcgggtcaatgcaacagGTCTTGAGGAAGTTGGTGGACGATGCATCTAAGTTTTTGAATGACAAAATTACCAAAGCAGTGGTTACTGTTCCTGCATACTTCAATGACTCACAGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - -tgaatgc
- - - - - - - - - - - - -tggcata
- - - - - - - - - - - - - - - - - - -gcttaca