1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tttgaggtcctgcgatagatgttttcttgggaaaatggtcctaccaatagatttgaagaagtaatttagcttactcgcgctctttgtattgccaattcagATTTTGCTTAATGCTACTTTATGCGTGTGTGGATAATGGAGTAATCACTGCTCTGTGTATCTGAGCTCACACCATGGGTAGCAGTGGCGCAGACGCACCG
species | Oryza sativa |
transcript | LOC_Os12g13170.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATCCCGAGGCCCCGCTCCGCCGCCCGCGGGATCGCGGGCCCCGACACAAG ATTTTGCTTAATGCTACTTTATGCGTGTGTGGATAATGGAGTAATCACTGCEST: gi|88580511|gb|CI697445.1|CI697445
genomic: ATCCCGAGGCCCCGCTCCGCCGCCCGCGGGATCGCGGGCCCCGACACAAGgtatccgccc ... gccaattcagATTTTGCTTAATGCTACTTTATGCGTGTGTGGATAATGGAGTAATCACTGC
EST: ATCCCGAGGCCCCGCTCCGCCGCCCGCGGGATCGCGGGCCCCGACACAAG ATTTTGCTTAATGCTACTTTATGCGTGTGTGGATAATGGAGTAATCANTGC
genomic: ATCCCGAGGCCCCGCTCCGCCGCCCGCGGGATCGCGGGCCCCGACACAAGgtatccgccc ... gccaattcagATTTTGCTTAATGCTACTTTATGCGTGTGTGGATAATGGAGTAATCACTGC
aatagatttgaagaagtaatttagcttactcgcgctctttgtattgccaattcagATTTTGCTTAATGCTACTTTATGCGTGTGTGGATAATGGAGTAATCACTGCTCTGTGTATCTGAGCTCACACCATGGGTAGCAGTGGCGCAGACGCACCG
agcttac putative branch site (score: 3)
aagtaattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgaggtcctgcgatagatgttttcttgggaaaatggtcctaccaatagatttgaagaagtaatttagcttactcgcgctctttgtattgccaattcagATTTTGCTTAATGCTACTTTATGCGTGTGTGGATAATGGAGTAATCACTGCTCTGTGTATCTGAGCTCACACCATGGGTAGCAGTGGCGCAGACGCACCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA