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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagattagggaaagatctctcctccactatcgctggaaaaaaaatgcaatgtttgatgaggtgtgtgcgagagtggtaatgaagttgtggatttgtggttgccgccgattgttgcagGAGGTGAACGAGATGTGGGCGGGGCTCGGGTATTACCGGAGGGCTCGATTTCTGCTCGAG

Basic information

species Oryza sativa
transcript LOC_Os12g10850.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g10850.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G425986_T01 (Zea mays), 3'ss of exon 1
-------------------------gtgagattagggaaagatctctcctccactatcgctggaaaaaaaatgcaatgtttga--tgaggtgtgtgcgag----agtggtaatgaagttgtggatttgtggttgccgccgattgttgcagGAGGTGAACGAGATGTGGGCGGGGCTCGGGTATTACCGGAGGGCTCGATTTCTGCTCGAG
                          |  || || || |||     |      || |   ||     || || | || |||||    |  | | || |||    | || ||||  | || | |||| |||| |   |  | |||  ||||||||||||||||||||||||||| || || || ||||| ||||||||||||||||| |||
gtacgcaaaaagcaatacttgataaatttgagtaagggaagcaaaataaatttctttt-ttgtggggaagattcgatctttgagcccaaatttttgtgaggttaaatgataatcgatttcttgattcgtggct--tgatgcttgccgcagGAGGTGAACGAGATGTGGGCGGGTCTTGGCTACTACCGTAGGGCTCGATTTCTGCTGGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgtgcgagagtggtaatgaagttgtggatttgtggttgccgccgattgttgcagGAGGTGAACGAGATGTGGGCGGGGCTCGGGTATTACCGGAGGGCTCGATTTCTGCTCGAG
              taatgaa  TA-rich tract