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gtcagtggctccgccgccgcattcctcgtcttcttggtggggattttttttcctcttggagcgagtggtgagtgaggcggttctttggtgttcttctttttgttgcctcctgcagTGTGGGACTGGGAGCGGCGGCGGCGTCGGAGGCAATGGACGCTTCGTCGGTGGCGCTCTACGGCCAGCTCAAG
species | Oryza sativa |
transcript | LOC_Os12g10784.3 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGCCAATCTCGATTCCCTCCTCCGCTCTACCTCGCCGGAGTTCACCCTG TGTGGGACTGGGAGCGGCGGCGGCGTCGGAGGCAATGGACGCTTCGTCGGTEST: gi|33681873|gb|CF310112.1|CF310112
genomic: CGCCAATCTCGATTCCCTCCTCCGCTCTACCTCGCCGGAGTTCACCCTGgtcagtggct ... cctcctgcagTGTGGGACTGGGAGCGGCGGCGGCGTCGGAGGCAATGGACGCTTCGTCGGT
EST: TCGCCAATCTCGATTCCCTCCTCCGCTCTACCTCGCCGGAGTTCACCCTG TGTGGGACTGGGAGCGGCGGCGGCGTCGGAGGCAATGGACGCTTCGTCGGTEST: gi|88433551|gb|CI594365.1|CI594365
genomic: TCGCCAATCTCGATTCCCTCCTCCGCTCTACCTCGCCGGAGTTCACCCTGgtcagtggct ... cctcctgcagTGTGGGACTGGGAGCGGCGGCGGCGTCGGAGGCAATGGACGCTTCGTCGGT
EST: TCGCCAATCTCGATTCCCTCCTCCGCTCTACCTCGCCGGAGTTCACCCTG TGTGGGACTGGGAGCGGCGGCGGCGTCGGAGGCAATGGACGCTTCGTCGGTEST: gi|58589242|gb|CF987550.1|CF987550
genomic: TCGCCAATCTCGATTCCCTCCTCCGCTCTACCTCGCCGGAGTTCACCCTGgtcagtggct ... cctcctgcagTGTGGGACTGGGAGCGGCGGCGGCGTCGGAGGCAATGGACGCTTCGTCGGT
EST: TCGCCAATCTCGATTCCCTCCTCCGCTCTACCTCGCCGGAGTTCACCCTG TGTGGGACTGGGAGCGGCGGCAGCGGCGGATGCAATGGACGCTTCGTCGGTEST: gi|88332901|gb|CI639749.1|CI639749
genomic: TCGCCAATCTCGATTCCCTCCTCCGCTCTACCTCGCCGGAGTTCACCCTGgtcagtggct ... cctcctgcagTGTGGGACTGGGAGCGGCGGCGGCGTCGGAGGCAATGGACGCTTCGTCGGT
EST: TCTACCTCGCCGGAGTTCACCCTG TGTGGGACTGGGAGCGGCGGCGGCGTCGGAGGCAATGGACGCTTCGTCGGT
genomic: TCTACCTCGCCGGAGTTCACCCTGgtcagtggct ... cctcctgcagTGTGGGACTGGGAGCGGCGGCGGCGTCGGAGGCAATGGACGCTTCGTCGGT
gcgagtggtgagtgaggcggttctttggtgttcttctttttgttgcctcctgcagTGTGGGACTGGGAGCGGCGGCGGCGTCGGAGGCAATGGACGCTTCGTCGGTGGCGCTCTACGGCCAGCTCAAG
tgttcttctttttgtt CT-rich tract
ttcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagtggctccgccgccgcattcctcgtcttcttggtggggattttttttcctcttggagcgagtggtgagtgaggcggttctttggtgttcttctttttgttgcctcctgcagTGTGGGACTGGGAGCGGCGGCGGCGTCGGAGGCAATGGACGCTTCGTCGGTGGCGCTCTACGGCCAGCTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -CGGCGGCG