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gtaagcacaccgagcctgcgaacccttccttccgttccttctctcctttggttcgtagccgctgaatgattttgggggtttcttctgttggttgaagCGGGGAGAGGACGGTGAGGAAGCTGAGGCTGTCCAAGGCGCTGACGATACCGGAGGGGACGACGGTGTCGGAGGCGTGCAGGAGGATGGCGGCGAGGAGG
species | Oryza sativa |
transcript | LOC_Os12g07190.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AACGGGAACGGGAAGGCCTCCTCCAAGCCCACCTCCCCCGGCCAGCTGAC CGGGGAGAGGACGGTGAGGAAGCTGAGGCTGTCCAAGGCGCTGACGATACCEST: gi|29616351|gb|CB621363.1|CB621363
genomic: AACGGGAACGGGAAGGCCTCCTCCAAGCCCACCTCCCCCGGCCAGCTGACgtaagcacac ... ttggttgaagCGGGGAGAGGACGGTGAGGAAGCTGAGGCTGTCCAAGGCGCTGACGATACC
EST: AACGGGAACGGGAAGGCCTCCTCCAAGCCCACCTCCCCCGGCCAGCTGAC CGGGGAGAGGACGGTGAGGAAGCTGAGGCTGTCCAAGGCGCTGACGATACCEST: gi|58605735|gb|CK033768.1|CK033768
genomic: AACGGGAACGGGAAGGCCTCCTCCAAGCCCACCTCCCCCGGCCAGCTGACgtaagcacac ... ttggttgaagCGGGGAGAGGACGGTGAGGAAGCTGAGGCTGTCCAAGGCGCTGACGATACC
EST: CCCCGGCCAGCTGAC CGGGGAGAGGACGGTGAGGAAGCTGAGGCTGTCCAAGGCGCTGACGATACCEST: gi|29620736|gb|CB625747.1|CB625747
genomic: CCCCGGCCAGCTGACgtaagcacac ... ttggttgaagCGGGGAGAGGACGGTGAGGAAGCTGAGGCTGTCCAAGGCGCTGACGATACC
EST: AACGGGAACGGGAAGGCCTCCTCCAAGCCCACCTCCCCCGGCCAGCTGAC CGGGGAGAGGACGGTGAGGAAGCTGAGGCTGTCCAAGGCGCTGACGATACCEST: gi|38475232|gb|CF959365.1|CF959365
genomic: AACGGGAACGGGAAGGCCTCCTCCAAGCCCACCTCCCCCGGCCAGCTGACgtaagcacac ... ttggttgaagCGGGGAGAGGACGGTGAGGAAGCTGAGGCTGTCCAAGGCGCTGACGATACC
EST: AACGGGAACGGGAAGGCCTCCTCCAAGCCCACCTCCCCCGGCCAGCTGAC CGGGGAGAGGACGGTGAGGAAGCTGAGGCTGTCCAAGGCGCTGACGATACCEST: gi|58663826|gb|CK052512.1|CK052512
genomic: AACGGGAACGGGAAGGCCTCCTCCAAGCCCACCTCCCCCGGCCAGCTGACgtaagcacac ... ttggttgaagCGGGGAGAGGACGGTGAGGAAGCTGAGGCTGTCCAAGGCGCTGACGATACC
EST: AACGGGAACGGGAAGGGCTCCTCCAAGCCCACCTCCCCCGGCCAGCTGAC CGGGGAGAGGACGGTGAGGAAGCTGAGGCTGTCCCAGGCGCTGACGATACCEST: gi|29617498|gb|CB622510.1|CB622510
genomic: AACGGGAACGGGAAGGCCTCCTCCAAGCCCACCTCCCCCGGCCAGCTGACgtaagcacac ... ttggttgaagCGGGGAGAGGACGGTGAGGAAGCTGAGGCTGTCCAAGGCGCTGACGATACC
EST: AACGGGAACGGGAAGGCCTCCTCCAAGCCCACCTCCCCCGGCCAGCTGAC CGGGGAGAGGACGGTGAGGAAGCTGAGGCTGTCCAAGGCGCTGACGATACC
genomic: AACGGGAACGGGAAGGCCTCCTCCAAGCCCACCTCCCCCGGCCAGCTGACgtaagcacac ... ttggttgaagCGGGGAGAGGACGGTGAGGAAGCTGAGGCTGTCCAAGGCGCTGACGATACC
ctcctttggttcgtagccgctgaatgattttgggggtttcttctgttggttgaagCGGGGAGAGGACGGTGAGGAAGCTGAGGCTGTCCAAGGCGCTGACGATACCGGAGGGGACGACGGTGTCGGAGGCGTGCAGGAGGATGGCGGCGAGGAGG
tttcttctgtt CT-rich tract
aatgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcacaccgagcctgcgaacccttccttccgttccttctctcctttggttcgtagccgctgaatgattttgggggtttcttctgttggttgaagCGGGGAGAGGACGGTGAGGAAGCTGAGGCTGTCCAAGGCGCTGACGATACCGGAGGGGACGACGGTGTCGGAGGCGTGCAGGAGGATGGCGGCGAGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG