1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...cttcaagcctcttacacatcatttcttggtattgttgtttaaccactgtttatttgcttatgtttcttcattgatgtggaatgtttaaaacattcaccagCTGGGGAGACTCGACGTGTTCCAGGATGCACAATGTGTGAAGGTCAATCCCGACTCACCTCAGAAGCAAGTTCGCTTCTTAACACTCTCAG
species | Oryza sativa |
transcript | LOC_Os12g07020.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCCACCACCGCATCCCCAACTTCGATGGCGCCGCAGCCGCCGCGGACTCG CTGGGGAGACTCGACGTGTTCCAGGATGCACAATGTGTGAAGGTCAATCCCEST: gi|29658507|gb|CB654782.1|CB654782
genomic: TCCACCACCGCATCCCCAACTTCGATGGCGCCGCAGCCGCCGCGGACTCGgtacgcgcgt ... cattcaccagCTGGGGAGACTCGACGTGTTCCAGGATGCACAATGTGTGAAGGTCAATCCC
EST: TCCACCACCGCATCCCCAACTTCGATGGCGCCGCAGCCGCCGCGGACTCG CTGGGGAGACTCGACGTGTTCCAGGATGCACAATGTGTGAAGGTCAATCCC
genomic: TCCACCACCGCATCCCCAACTTCGATGGCGCCGCAGCCGCCGCGGACTCGgtacgcgcgt ... cattcaccagCTGGGGAGACTCGACGTGTTCCAGGATGCACAATGTGTGAAGGTCAATCCC
ctgtttatttgcttatgtttcttcattgatgtggaatgtttaaaacattcaccagCTGGGGAGACTCGACGTGTTCCAGGATGCACAATGTGTGAAGGTCAATCCCGACTCACCTCAGAAGCAAGTTCGCTTCTTAACACTCTCAG
cattgat putative branch site (score: 1)
aatgtttaaaacatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttcaagcctcttacacatcatttcttggtattgttgtttaaccactgtttatttgcttatgtttcttcattgatgtggaatgtttaaaacattcaccagCTGGGGAGACTCGACGTGTTCCAGGATGCACAATGTGTGAAGGTCAATCCCGACTCACCTCAGAAGCAAGTTCGCTTCTTAACACTCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- -caagcct
- - - - - - - - - - -tttcttg
- - - - - - - - - - - - - - - -ttgttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gcttatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggaatg