1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gttttcattcttgcaatgctacaagtgtatatggacatctgctatatagatagcatattgatatatgattaatgtgatatgatatgtttgttcctcgcagCATTTGGGCAGTCGTCCACTAGCCCTTTCGGCCAGACCTCAAGCAACCCTTTTGGGGCCCAGACAGGATTTGGCCAGGCCAGCACCTCCACCTCCAATCC
species | Oryza sativa |
transcript | LOC_Os12g06890.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGCAGCCATGTTCGGCTCCAGCAACC CATTTGGGCAGTCGTCCACTAGCCCTTTCGGCCAGACCTCAAGCAACCCTTEST: gi|58674191|gb|CK062877.1|CK062877
genomic: AGCAGCCATGTTCGGCTCCAGCAACCgtaagcgcct ... ttcctcgcagCATTTGGGCAGTCGTCCACTAGCCCTTTCGGCCAGACCTCAAGCAACCCTT
EST: GGCTCCAGCAACC CATTTGGGCAGTCGTCCACTAGCCCTTTCGGCCAGACCTCAAGCAACCCTT
genomic: GGCTCCAGCAACCgtaagcgcct ... ttcctcgcagCATTTGGGCAGTCGTCCACTAGCCCTTTCGGCCAGACCTCAAGCAACCCTT
atagatagcatattgatatatgattaatgtgatatgatatgtttgttcctcgcagCATTTGGGCAGTCGTCCACTAGCCCTTTCGGCCAGACCTCAAGCAACCCTTTTGGGGCCCAGACAGGATTTGGCCAGGCCAGCACCTCCACCTCCAATCC
gattaat putative branch site (score: 2)
tttgttcctc putative PPT
atattgatatatgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttcattcttgcaatgctacaagtgtatatggacatctgctatatagatagcatattgatatatgattaatgtgatatgatatgtttgttcctcgcagCATTTGGGCAGTCGTCCACTAGCCCTTTCGGCCAGACCTCAAGCAACCCTTTTGGGGCCCAGACAGGATTTGGCCAGGCCAGCACCTCCACCTCCAATCC
- - - - tcttgca
- - - - - - - - tgctaca
- - - - - - - - - - - - - - - - - -catctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgtttg