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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgtctcccccggatccgtgctcctcctccccctccgaatctccccgccccatttcacccacctgattttctttacagCGGTTGCGCCTAGGGTTCTTGATTTTGAGCTTCGGAGCGAGGCGAGGCGGAGATGTCGTTCCGCAGCATTGTCCGCGACGTGCGCGACGGGTTCGGGAGC

Basic information

species Oryza sativa
transcript LOC_Os12g06630.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58668586|gb|CK057272.1|CK057272
EST:     GCCACCCCCGTAG                         CGGTTGCGCCTAGGGTTCTTGATTTTGAGCTTCGGAGCGAGGCGAGGCGG
genomic: GCCACCCCCG-AGgttcgtctcc ... ttctttacagCGGTTGCGCCTAGGGTTCTTGATTTTGAGCTTCGGAGCGAGGCGAGGCGG
EST: gi|58603128|gb|CK013656.1|CK013656
EST:     CTCCCCCGCCGGCCACCGCTAGCCGCCGCCGGCGCCACCCCCGAG                         CGGTTGCGCCTAGGGTTCTTGATTTTGAGCTTCGGAGCGAGGCGAGGCGGA
genomic: CTCCCCCGCCGGCCACCGCTAGCTGCCGCCGGCGCCACCCCCGAGgttcgtctcc ... ttctttacagCGGTTGCGCCTAGGGTTCTTGATTTTGAGCTTCGGAGCGAGGCGAGGCGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcctccccctccgaatctccccgccccatttcacccacctgattttctttacagCGGTTGCGCCTAGGGTTCTTGATTTTGAGCTTCGGAGCGAGGCGAGGCGGAGATGTCGTTCCGCAGCATTGTCCGCGACGTGCGCGACGGGTTCGGGAGC
                                     acctgat  putative branch site (score: 4)
                                           ttttctttac  CT-rich tract
                                          attttcttta  TA-rich tract