1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gactagtgattttgggggagcaggatggaatgctgagaatgtgctgtgaatttggcatctttgatggtgattctcttcaacatttttgtgcattctgaagGCATTTGGTGTGGGAGGATGGCTTCTGCGGCCACGCATCGTGCTCTGCTGGATCTGAGGCTTCTGAGGCTGGGTGCGAGTCCGGCGGCGCCGTCTGCACG
species | Oryza sativa |
transcript | LOC_Os12g06335.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGGTGGTCGTACGCCGTCTTCTGGAAGGCCATCGGCGCCGCCGACCCCGT GCATTTGGTGTGGGAGGATGGCTTCTGCGGCCACGCATCGTGCTCTGCTGGEST: gi|58654584|gb|CK043264.1|CK043264
genomic: CGGTGGTCGTACGCCGTCTTCTGGAAGGCCATCGGCGCCGCCGACCCCGTgtaagcccct ... cattctgaagGCATTTGGTGTGGGAGGATGGCTTCTGCGGCCACGCATCGTGCTCTGCTGG
EST: CGGTGGTCGTACGCCGTCTTCTGGAAGGCCATCGGCGCCGCCGACCCCGT GCATTTGGTGTGGGAGGATGGCTTCTGCGGCCACGCATCGTGCTCTGCTGG
genomic: CGGTGGTCGTACGCCGTCTTCTGGAAGGCCATCGGCGCCGCCGACCCCGTgtaagcccct ... cattctgaagGCATTTGGTGTGGGAGGATGGCTTCTGCGGCCACGCATCGTGCTCTGCTGG
gtgaatttggcatctttgatggtgattctcttcaacatttttgtgcattctgaagGCATTTGGTGTGGGAGGATGGCTTCTGCGGCCACGCATCGTGCTCTGCTGGATCTGAGGCTTCTGAGGCTGGGTGCGAGTCCGGCGGCGCCGTCTGCACG
ctttgat putative branch site (score: 5)
aacattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gactagtgattttgggggagcaggatggaatgctgagaatgtgctgtgaatttggcatctttgatggtgattctcttcaacatttttgtgcattctgaagGCATTTGGTGTGGGAGGATGGCTTCTGCGGCCACGCATCGTGCTCTGCTGGATCTGAGGCTTCTGAGGCTGGGTGCGAGTCCGGCGGCGCCGTCTGCACG
- - - - - - - - ggagcag
- - - - - - - - - - - - - - aatgctg
- - - - - - - - - - - - - - - - - - - - gtgctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - tggcatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgatgg