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gtatgtttctttctttgactctctcatcttgaattcttcacatcatctggcgtgtagcatactagcatgtacagtagcagcgatcatgatgttcttttttgttgttctttgtggaggtagATCGAAGAAATTTGAGCTAGCGCTTCGTTCTGATTCTTGGAGATACTGGGAGATCGAGCTGTGGTTTTGTGGCTCGTAGGATGGGAGAGGCTAGGAGAGG
species | Oryza sativa |
transcript | LOC_Os12g05680.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTGCTATAGTAGCTCTTGGCTCTTGCTTATCACAAGAGACCACAATCTTG ATCGAAGAAATTTGAGCTAGCGCTTCGTTCTGATTCTTGGAGATACTGGGAEST: gi|86900907|gb|CI304112.1|CI304112
genomic: CTGCTATAGTAGCTCTTGGCTCTTGCTTATCACAAGAGACCACAATCTTGgtatgtttct ... gtggaggtagATCGAAGAAATTTGAGCTAGCGCTTCGTTCTGATTCTTGGAGATACTGGGA
EST: CTGCTATAGTAGCTCTTGGCTCTTGCTTATCACAAGAGACCACAATCTTG ATCGAAGAAATTTGAGCTAGCGCTTCGTTCTGATTCTTGGAGATACTGGGAEST: gi|88447470|gb|CI584548.1|CI584548
genomic: CTGCTATAGTAGCTCTTGGCTCTTGCTTATCACAAGAGACCACAATCTTGgtatgtttct ... gtggaggtagATCGAAGAAATTTGAGCTAGCGCTTCGTTCTGATTCTTGGAGATACTGGGA
EST: CTGCTATAGTAGCTCTTGGCTCTTGCTTATCACAAGAGACCACAATCTTG ATCGAAGAAATTTGAGCTAGCGCTTCGTTCTGATTCTTGGAGEST: gi|88315061|gb|CI610120.1|CI610120
genomic: CTGCTATAGTAGCTCTTGGCTCTTGCTTATCACAAGAGACCACAATCTTGgtatgtttct ... gtggaggtagATCGAAGAAATTTGAGCTAGCGCTTCGTTCTGATTCTTGGAG
EST: CTGCTATAGTAGCTCTTGGCTCTTGCTTATCACAAGAGACCACAATCTTG ATCGAAGAAATTTGAGCTAGCGCTTCGTTCTGATTCTTGGAGATACTGGGAEST: gi|88390756|gb|CI610982.1|CI610982
genomic: CTGCTATAGTAGCTCTTGGCTCTTGCTTATCACAAGAGACCACAATCTTGgtatgtttct ... gtggaggtagATCGAAGAAATTTGAGCTAGCGCTTCGTTCTGATTCTTGGAGATACTGGGA
EST: CTGCTATAGTAGCTCTTGGCTCTTGCTTATCACAAGAGACCACAATCTTG ATCGAAGAAATTTGAGCTAGCGCTTCGTTCTGAEST: gi|3106880|gb|D42608.1|D42608
genomic: CTGCTATAGTAGCTCTTGGCTCTTGCTTATCACAAGAGACCACAATCTTGgtatgtttct ... gtggaggtagATCGAAGAAATTTGAGCTAGCGCTTCGTTCTGA
EST: CTGCTATAGTAGCTCTTNNCTCTTGCTTATCACAAGAGACCACAATCTTG ATCGAAGAAATTTGAGCTAGCGCTTCGTTCTGATTCTTGGAGATACTGGGA
genomic: CTGCTATAGTAGCTCTTGGCTCTTGCTTATCACAAGAGACCACAATCTTGgtatgtttct ... gtggaggtagATCGAAGAAATTTGAGCTAGCGCTTCGTTCTGATTCTTGGAGATACTGGGA
catgtacagtagcagcgatcatgatgttcttttttgttgttctttgtggaggtagATCGAAGAAATTTGAGCTAGCGCTTCGTTCTGATTCTTGGAGATACTGGGAGATCGAGCTGTGGTTTTGTGGCTCGTAGGATGGGAGAGGCTAGGAGAGG
ttcttttttgttgttc CT-rich tract
ttctttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtttctttctttgactctctcatcttgaattcttcacatcatctggcgtgtagcatactagcatgtacagtagcagcgatcatgatgttcttttttgttgttctttgtggaggtagATCGAAGAAATTTGAGCTAGCGCTTCGTTCTGATTCTTGGAGATACTGGGAGATCGAGCTGTGGTTTTGTGGCTCGTAGGATGGGAGAGGCTAGGAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG