Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|58683664|gb|CK072351.1|CK072351EST: TCACCCAATGCAGATCGATGGGGGTCGTACCAGTAGCAGAGATCATGGCT CTAGCTGCACAGTGGTGACAATGGCGATGCTGCTGTTGTTGCGTTCTTTGG
genomic: TCACCCAATGCAGATCGATGGGGGTCGTACCAGTAGCAGAGATCATGGCTgtgagcctgt ... gtgctcgcagCTAGCTGCACAGTGGTGACAATGGCGATGCTGCTGTTGTTGCGTTCTTTGG
EST:
gi|58675415|gb|CK064102.1|CK064102EST: TCACCCAATGCAGATCGATGGGGGTCGTACCAGTAGCAGAGATCATGGCT CTAGCTGCACAGTGGTGACAATGGCGATGCTGCTGTTGTTGCGTTCTTTGG
genomic: TCACCCAATGCAGATCGATGGGGGTCGTACCAGTAGCAGAGATCATGGCTgtgagcctgt ... gtgctcgcagCTAGCTGCACAGTGGTGACAATGGCGATGCTGCTGTTGTTGCGTTCTTTGG
EST:
gi|58684579|gb|CK073266.1|CK073266EST: TCACCCAATGCAGATCGATGGGGGTCGTACCAGTAGCAGAGATCATGGCT CTAGCTGCACAGTGGTGACAATGGCGATGCTGCTGTTGTTGCGTTCTTTGG
genomic: TCACCCAATGCAGATCGATGGGGGTCGTACCAGTAGCAGAGATCATGGCTgtgagcctgt ... gtgctcgcagCTAGCTGCACAGTGGTGACAATGGCGATGCTGCTGTTGTTGCGTTCTTTGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgccaatcttgaatctttctagctaaaagaatcatctgtgctcttgtgctcgcagCTAGCTGCACAGTGGTGACAATGGCGATGCTGCTGTTGTTGCGTTCTTTGGAGTTCTTGGCGATCATGGCGGTTGCATCGAGCTTGGCAATGCCGGTGGC
agctaaa putative branch site (score: 3)
ctcttgt putative PPT
taaaagaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgagcctgtgattgagtgatccctttcctccatgccaatcttgaatctttctagctaaaagaatcatctgtgctcttgtgctcgcagCTAGCTGCACAGTGGTGACAATGGCGATGCTGCTGTTGTTGCGTTCTTTGGAGTTCTTGGCGATCATGGCGGTTGCATCGAGCTTGGCAATGCCGGTGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT