1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtattacaagatttttcttttgtgcttgcagactcttttcttctctcagttgctgtatgaattggcacctgatggtaggtttggcttttgtttgtgtagTAACCACTGTTGATTCGGGGAGCAAGGCTCTGGAGTTCTTGGGGCTCCATGATCATGAGGACAGCCCAATTTCTACTCAATCAGATCAGCAG
species | Oryza sativa |
transcript | LOC_Os12g04500.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCCTGACAGGAAGCTCATCGAGAGGCTACTCAAGACCTCTTCTTTCCAAG TAACCACTGTTGATTCGGGGAGCAAGGCTCTGGAGTTCTTGGGGCTCCATGEST: gi|88299732|gb|CI577234.1|CI577234
genomic: TCCTGACAGGAAGCTCATCGAGAGGCTACTCAAGACCTCTTCTTTCCAAGgtattacaag ... gtttgtgtagTAACCACTGTTGATTCGGGGAGCAAGGCTCTGGAGTTCTTGGGGCTCCATG
EST: TCCTGACAGGAAGCTCATCGAGAGGCTACTCAAGACCTCTTCTTTCCAAG TAACCACTGTTGATTCGGGGAGCAAGGCTCTGGAGTTCTTGGGGCTCCATG
genomic: TCCTGACAGGAAGCTCATCGAGAGGCTACTCAAGACCTCTTCTTTCCAAGgtattacaag ... gtttgtgtagTAACCACTGTTGATTCGGGGAGCAAGGCTCTGGAGTTCTTGGGGCTCCATG
ctcagttgctgtatgaattggcacctgatggtaggtttggcttttgtttgtgtagTAACCACTGTTGATTCGGGGAGCAAGGCTCTGGAGTTCTTGGGGCTCCATGATCATGAGGACAGCCCAATTTCTACTCAATCAGATCAGCAG
acctgat putative branch site (score: 8)
cttttgttt putative PPT
tatgaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattacaagatttttcttttgtgcttgcagactcttttcttctctcagttgctgtatgaattggcacctgatggtaggtttggcttttgtttgtgtagTAACCACTGTTGATTCGGGGAGCAAGGCTCTGGAGTTCTTGGGGCTCCATGATCATGAGGACAGCCCAATTTCTACTCAATCAGATCAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA