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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcgattggtgctgactgtctcgcgatattttattttattttattttattttcatcatggtttaattcgagcctaactctgcctctactctttcttcaatctttatcggtgggtggattgaagAAAGCCGAAGCTTCATCGTCTAGGGTGCCTTCTTGCCCAGCCAAG

Basic information

species Oryza sativa
transcript LOC_Os12g03822.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58596309|gb|CK006837.1|CK006837
EST:     CTCCGATGGGTCGCAAGATCAAAGTCAAGAAGAAGAAGGCATCGAGCAAG                         AAAGCCGAAGCTTCATCGTCTAGGGTGCCTTCTTGCCCAGCCAAG
genomic: CTCCGATGGGTCGCAAGATCAAAGTCAAGAAGAAGAAGGCATCGAGCAAGgtgagcgatt ... tggattgaagAAAGCCGAAGCTTCATCGTCTAGGGTGCCTTCTTGCCCAGCCAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagcctaactctgcctctactctttcttcaatctttatcggtgggtggattgaagAAAGCCGAAGCTTCATCGTCTAGGGTGCCTTCTTGCCCAGCCAAG
  gcctaac  putative branch site (score: 2)
                             aatctttat  TA-rich tract