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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgatgccatctagtaatagcatctgcttgtccgatgcctatctttcttagttgacttctcatgcatactgtatcatcttctggccttatttgttcaacagACACACGACCTGCACTAGTGTTTACAGCTCCAAGTATGGGTTCCAGAGAACCCTTCCTGAGTGCCATCTTCTTCTTCTTCTTCTTGCTTTTGTTCTGCCT

Basic information

species Oryza sativa
transcript LOC_Os12g03470.5
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88431593|gb|CI576784.1|CI576784
EST:     CACTTCTTTCTTCCTGATTCCTGACGTCTTGGATGGTGCGCTTTATTATG                         ACACACGACCTGCACTAGTGTTTACAGCTCCAAGTATGGGTTCCAGA
genomic: CACTTCTTTCTTCCTGATTCCTGACGTCTTGGATGGTGCGCTTTATTATGgtgagaaatt ... tgttcaacagACACACGACCTGCACTAGTGTTTACAGCTCCAAGTATGGGTTCCAGA
EST: gi|29624170|gb|CB629181.1|CB629181
EST:     CACTTCTTTCTTCCTGATTCCTGACGTCTTGGATGGTGCGCTTTATTATG                         ACACACGACCTGCACTAGTGTTTACAGCTCCAAGTATGGGTTCCAGAGAAC
genomic: CACTTCTTTCTTCCTGATTCCTGACGTCTTGGATGGTGCGCTTTATTATGgtgagaaatt ... tgttcaacagACACACGACCTGCACTAGTGTTTACAGCTCCAAGTATGGGTTCCAGAGAAC
EST: gi|29624168|gb|CB629179.1|CB629179
EST:     CACTTCTTTCTTCCTGATTCCTGACGTCTTGGATGGTGCGCTTTATTATG                         ACACACGACCTGCACTAGTGTTTACAGCTCCAAGTATGGGTTCCAGAGAAC
genomic: CACTTCTTTCTTCCTGATTCCTGACGTCTTGGATGGTGCGCTTTATTATGgtgagaaatt ... tgttcaacagACACACGACCTGCACTAGTGTTTACAGCTCCAAGTATGGGTTCCAGAGAAC
EST: gi|29627193|gb|CB632204.1|CB632204
EST:     CACTTCTTTCTTCCTGATTCCTGACGTCTTGGATGGTGCGCTTTATTATG                         ACACACGACCTGCACTAGTGTTTACAGCTCCAAGTATGGGTTCCAGAGAAC
genomic: CACTTCTTTCTTCCTGATTCCTGACGTCTTGGATGGTGCGCTTTATTATGgtgagaaatt ... tgttcaacagACACACGACCTGCACTAGTGTTTACAGCTCCAAGTATGGGTTCCAGAGAAC
EST: gi|88327708|gb|CI657748.1|CI657748
EST:     CACTTCTTTCTTCCTGATTCCTGACGTCTTGGATGGTGCGCTTTATTATG                         ACANACGACCTGCACTAGTGTTTACAGCTCCAAGTATGGGTTCCAGAGAAC
genomic: CACTTCTTTCTTCCTGATTCCTGACGTCTTGGATGGTGCGCTTTATTATGgtgagaaatt ... tgttcaacagACACACGACCTGCACTAGTGTTTACAGCTCCAAGTATGGGTTCCAGAGAAC
EST: gi|88404788|gb|CI583595.1|CI583595
EST:     CACTTCTTTCTTCCTGATTCCTGACGTCTTGGATGGTGCGCTTTATTATG                         ACACACGACCTGCACTAGTGTTTACAGCTCCAAGTATGGGTTCAAGAGAAC
genomic: CACTTCTTTCTTCCTGATTCCTGACGTCTTGGATGGTGCGCTTTATTATGgtgagaaatt ... tgttcaacagACACACGACCTGCACTAGTGTTTACAGCTCCAAGTATGGGTTCCAGAGAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttagttgacttctcatgcatactgtatcatcttctggccttatttgttcaacagACACACGACCTGCACTAGTGTTTACAGCTCCAAGTATGGGTTCCAGAGAACCCTTCCTGAGTGCCATCTTCTTCTTCTTCTTCTTGCTTTTGTTCTGCCT
   agttgac  putative branch site (score: 4)
                                      ccttattt  putative PPT
                                        ttatttgtt  TA-rich tract