1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...tgatgccatctagtaatagcatctgcttgtccgatgcctatctttcttagttgacttctcatgcatactgtatcatcttctggccttatttgttcaacagACACACGACCTGCACTAGTGTTTACAGCTCCAAGTATGGGTTCCAGAGAACCCTTCCTGAGTGCCATCTTCTTCTTCTTCTTCTTGCTTTTGTTCTGCCT
species | Oryza sativa |
transcript | LOC_Os12g03470.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CACTTCTTTCTTCCTGATTCCTGACGTCTTGGATGGTGCGCTTTATTATG ACACACGACCTGCACTAGTGTTTACAGCTCCAAGTATGGGTTCCAGAEST: gi|29624170|gb|CB629181.1|CB629181
genomic: CACTTCTTTCTTCCTGATTCCTGACGTCTTGGATGGTGCGCTTTATTATGgtgagaaatt ... tgttcaacagACACACGACCTGCACTAGTGTTTACAGCTCCAAGTATGGGTTCCAGA
EST: CACTTCTTTCTTCCTGATTCCTGACGTCTTGGATGGTGCGCTTTATTATG ACACACGACCTGCACTAGTGTTTACAGCTCCAAGTATGGGTTCCAGAGAACEST: gi|29624168|gb|CB629179.1|CB629179
genomic: CACTTCTTTCTTCCTGATTCCTGACGTCTTGGATGGTGCGCTTTATTATGgtgagaaatt ... tgttcaacagACACACGACCTGCACTAGTGTTTACAGCTCCAAGTATGGGTTCCAGAGAAC
EST: CACTTCTTTCTTCCTGATTCCTGACGTCTTGGATGGTGCGCTTTATTATG ACACACGACCTGCACTAGTGTTTACAGCTCCAAGTATGGGTTCCAGAGAACEST: gi|29627193|gb|CB632204.1|CB632204
genomic: CACTTCTTTCTTCCTGATTCCTGACGTCTTGGATGGTGCGCTTTATTATGgtgagaaatt ... tgttcaacagACACACGACCTGCACTAGTGTTTACAGCTCCAAGTATGGGTTCCAGAGAAC
EST: CACTTCTTTCTTCCTGATTCCTGACGTCTTGGATGGTGCGCTTTATTATG ACACACGACCTGCACTAGTGTTTACAGCTCCAAGTATGGGTTCCAGAGAACEST: gi|88327708|gb|CI657748.1|CI657748
genomic: CACTTCTTTCTTCCTGATTCCTGACGTCTTGGATGGTGCGCTTTATTATGgtgagaaatt ... tgttcaacagACACACGACCTGCACTAGTGTTTACAGCTCCAAGTATGGGTTCCAGAGAAC
EST: CACTTCTTTCTTCCTGATTCCTGACGTCTTGGATGGTGCGCTTTATTATG ACANACGACCTGCACTAGTGTTTACAGCTCCAAGTATGGGTTCCAGAGAACEST: gi|88404788|gb|CI583595.1|CI583595
genomic: CACTTCTTTCTTCCTGATTCCTGACGTCTTGGATGGTGCGCTTTATTATGgtgagaaatt ... tgttcaacagACACACGACCTGCACTAGTGTTTACAGCTCCAAGTATGGGTTCCAGAGAAC
EST: CACTTCTTTCTTCCTGATTCCTGACGTCTTGGATGGTGCGCTTTATTATG ACACACGACCTGCACTAGTGTTTACAGCTCCAAGTATGGGTTCAAGAGAAC
genomic: CACTTCTTTCTTCCTGATTCCTGACGTCTTGGATGGTGCGCTTTATTATGgtgagaaatt ... tgttcaacagACACACGACCTGCACTAGTGTTTACAGCTCCAAGTATGGGTTCCAGAGAAC
cttagttgacttctcatgcatactgtatcatcttctggccttatttgttcaacagACACACGACCTGCACTAGTGTTTACAGCTCCAAGTATGGGTTCCAGAGAACCCTTCCTGAGTGCCATCTTCTTCTTCTTCTTCTTGCTTTTGTTCTGCCT
agttgac putative branch site (score: 4)
ccttattt putative PPT
ttatttgtt TA-rich tract