1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtacgtacctcgtctgaccgcccctccctctccccctcctctccgattggatgctctcatcgccgatacttgtatagGGCGTCGCCATCCGGGTGCTCGGCGTCGCCGACAGCTCCTCTCTGCTCGTCGCCGACGACCTCCACTCCAACGGCTTCGACGACGCGCTCCTCGCTGATC
species | Oryza sativa |
transcript | LOC_Os12g03190.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCCACCTCCTCCGCCACATCCTCTCCTGCCGCCCTCTCCACGCCAACCAG GGCGTCGCCATCCGGGTGCTCGGCGTCGCCGACAGCTCCTCTCTGCTCGTCEST: gi|88851700|gb|CI674902.1|CI674902
genomic: GCCACCTCCTCCGCCACATCCTCTCCTGCCGCCCTCTCCACGCCAACCAGgtacgtacct ... acttgtatagGGCGTCGCCATCCGGGTGCTCGGCGTCGCCGACAGCTCCTCTCTGCTCGTC
EST: GCCACCTCCTCCGCCACATCCTCTCCTGCCGCCCTCTCCACGCCAACCAG GGCGTCGCCATCCGGGTGCTCGGCGTCGCCGACAGCTCCTCTCTGCTCGTCEST: gi|88362042|gb|CI607042.1|CI607042
genomic: GCCACCTCCTCCGCCACATCCTCTCCTGCCGCCCTCTCCACGCCAACCAGgtacgtacct ... acttgtatagGGCGTCGCCATCCGGGTGCTCGGCGTCGCCGACAGCTCCTCTCTGCTCGTC
EST: GCCACCTCCTCCGCCAAATCCTCTCCTGCCGCCCTCTCCACGCCAACCAG GGCGTCGCCATCCGGGTGCTCGGCGTCGCCGACAGCTCCTCTCTGCTCGTCEST: gi|88587271|gb|CI705007.1|CI705007
genomic: GCCACCTCCTCCGCCACATCCTCTCCTGCCGCCCTCTCCACGCCAACCAGgtacgtacct ... acttgtatagGGCGTCGCCATCCGGGTGCTCGGCGTCGCCGACAGCTCCTCTCTGCTCGTC
EST: GCCACCTCCTCCGCCACATCCTCTCCTGCCGCCCTCTCCACGCCAACCAG GGCGTCGCCATCCGGGTGCTCGGCGTCGCCGACAGCTCCTCTCTGCTCGTCEST: gi|88579428|gb|CI688414.1|CI688414
genomic: GCCACCTCCTCCGCCACATCCTCTCCTGCCGCCCTCTCCACGCCAACCAGgtacgtacct ... acttgtatagGGCGTCGCCATCCGGGTGCTCGGCGTCGCCGACAGCTCCTCTCTGCTCGTC
EST: GCCACCTCCTCCGCCACATCCTCTCCTGCCGCCCTCTCCACGCCAACCAG GGCGTCGCCATCCGGGTGCTCGGCGTCGCCGACAGCTCCTCTCTGCTCGTCEST: gi|88427682|gb|CI689547.1|CI689547
genomic: GCCACCTCCTCCGCCACATCCTCTCCTGCCGCCCTCTCCACGCCAACCAGgtacgtacct ... acttgtatagGGCGTCGCCATCCGGGTGCTCGGCGTCGCCGACAGCTCCTCTCTGCTCGTC
EST: GCCACCTCCTCCGCCACATCCTCTCCTGCCGCCCTCTCCACGCCAACCAG GGCGTCGCCATCCGGGTGCTCGGCGTCGCCGACAGCTCCTCTCTGCTCGTCEST: gi|88582444|gb|CI699857.1|CI699857
genomic: GCCACCTCCTCCGCCACATCCTCTCCTGCCGCCCTCTCCACGCCAACCAGgtacgtacct ... acttgtatagGGCGTCGCCATCCGGGTGCTCGGCGTCGCCGACAGCTCCTCTCTGCTCGTC
EST: GCCACCTCCTCCGCCACATCCTCTCCTGCCGCCCTCTCCACGCCAACCAG GGCGTCGCCATCCGGGTGCTCGGCGTCGCCGACAGCTCCTCTCTGCTCGTCEST: gi|88727097|gb|CI750752.1|CI750752
genomic: GCCACCTCCTCCGCCACATCCTCTCCTGCCGCCCTCTCCACGCCAACCAGgtacgtacct ... acttgtatagGGCGTCGCCATCCGGGTGCTCGGCGTCGCCGACAGCTCCTCTCTGCTCGTC
EST: GCCACCTCCTCCGCCACATCCTCTCCTGCCGCCCTCTCCACGCCAACCAG GGCGTCGCCATCCGGGTGCTCGGCGTCGCCGACAGCTCCTCTCTGCTCGTCEST: gi|88467150|gb|CI696509.1|CI696509
genomic: GCCACCTCCTCCGCCACATCCTCTCCTGCCGCCCTCTCCACGCCAACCAGgtacgtacct ... acttgtatagGGCGTCGCCATCCGGGTGCTCGGCGTCGCCGACAGCTCCTCTCTGCTCGTC
EST: GCCACCTCCTCCGCCACATCCTCTCCTGCCGCCCTCTCCACGCCAACCAG GGCGTCGCCATCCGGGTGCTCGGCGTCGCCGACAGCTCCTCTCTGCTCGTCEST: gi|88903812|gb|CI711514.1|CI711514
genomic: GCCACCTCCTCCGCCACATCCTCTCCTGCCGCCCTCTCCACGCCAACCAGgtacgtacct ... acttgtatagGGCGTCGCCATCCGGGTGCTCGGCGTCGCCGACAGCTCCTCTCTGCTCGTC
EST: GCCACCTCCTCCGCCACATCCTCTCCTGCCGCCCTCTCCACGCCAACCAG GGCGTCGCCATCCGGGTGCTCGGCGTCGCCGACAGCTCCTCTCTGCTCGTCEST: gi|2310428|gb|C26583.1|C26583
genomic: GCCACCTCCTCCGCCACATCCTCTCCTGCCGCCCTCTCCACGCCAACCAGgtacgtacct ... acttgtatagGGCGTCGCCATCCGGGTGCTCGGCGTCGCCGACAGCTCCTCTCTGCTCGTC
EST: -CANCCTCCTCCGCCACATCCTCTCCTGCCGCCCTCTCCACGCCAACCAG GGCGTCGCCATCCGGGTGCTCGGCGTCGCCGACAGCTCCTCTCTGCTCGTCEST: gi|88306132|gb|CI636510.1|CI636510
genomic: CCA-CCTCCTCCGCCACATCCTCTCCTGCCGCCCTCTCCACGCCAACCAGgtacgtacct ... acttgtatagGGCGTCGCCATCCGGGTGCTCGGCGTCGCCGACAGCTCCTCTCTGCTCGTC
EST: GCCACCTCCTCCGCCACATCCTCTCCTGCCGCCCTCTCCACGCCAACCAG GGCGTCGCCATCCGGGTGCTCGGCGTCGCCGACAGCTCCTCTCTGCTCGTCEST: gi|88589443|gb|CI707322.1|CI707322
genomic: GCCACCTCCTCCGCCACATCCTCTCCTGCCGCCCTCTCCACGCCAACCAGgtacgtacct ... acttgtatagGGCGTCGCCATCCGGGTGCTCGGCGTCGCCGACAGCTCCTCTCTGCTCGTC
EST: GCCACCTCCTCCGCCACATCCTCTCCTGCCGCCCTCTCCACGCCAACCAG GGCGTCGCCATCCGGGTGCTCGGCGTCGCCGACAGCTCCTCTCTGCTCGTCEST: gi|88333928|gb|CI645342.1|CI645342
genomic: GCCACCTCCTCCGCCACATCCTCTCCTGCCGCCCTCTCCACGCCAACCAGgtacgtacct ... acttgtatagGGCGTCGCCATCCGGGTGCTCGGCGTCGCCGACAGCTCCTCTCTGCTCGTC
EST: GCCACCTCCTCCGCCACATCCTCTCCTGCCGCCCTCTCCACGCCAACCAG GGCGTCGCCATCCGGGTGCTCGGCGTNGCCGACAGCTCCTCTCTGCTCGTC
genomic: GCCACCTCCTCCGCCACATCCTCTCCTGCCGCCCTCTCCACGCCAACCAGgtacgtacct ... acttgtatagGGCGTCGCCATCCGGGTGCTCGGCGTCGCCGACAGCTCCTCTCTGCTCGTC
cctccctctccccctcctctccgattggatgctctcatcgccgatacttgtatagGGCGTCGCCATCCGGGTGCTCGGCGTCGCCGACAGCTCCTCTCTGCTCGTCGCCGACGACCTCCACTCCAACGGCTTCGACGACGCGCTCCTCGCTGATC
ttgtata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtacctcgtctgaccgcccctccctctccccctcctctccgattggatgctctcatcgccgatacttgtatagGGCGTCGCCATCCGGGTGCTCGGCGTCGCCGACAGCTCCTCTCTGCTCGTCGCCGACGACCTCCACTCCAACGGCTTCGACGACGCGCTCCTCGCTGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT