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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagagtacttattaactgctaaagataattattatcctcctactacttaattactactactactaataaagatatataaacataatttttgtgttggttgcagGTGGATCCTGGGCTGAGCTCGTACGCTGGGCGGCCGCAAGAGGCAGCAAAATCCATAATGCCTCTGCTTGACAAGGCCAACCACGCTATCCCTATCTGGC

Basic information

species Oryza sativa
transcript LOC_Os12g03030.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g03030.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G143971_T01 (Zea mays), 3'ss of exon 1
---------------gtgagagtacttattaactgctaaagataattattatcctcctactacttaattactactactactaataaagatatataaacataatttttgtgttggttgcagGTGGATCCTGGGCTGAGCTCGTACGCTGGGCGGCCGCAAGAGGCAGCAAAATCCATAATGCCTCTGCTTGACAAGGCCAACCACGCTATCCCTATCTGGC
                ||| ||||||     ||| ||  | || |     | | |     |  |    ||       ||   |||  |||  |  | || | ||||  |  | | |||||||  | || ||||||||||| |||||||| |  || |||||||| ||||| |||||  ||||||| ||||||||||||||    |   ||||||    ||
gtatatatgtgtggtttgacagtact-gcacactactgta-atgagagcaaacttttgtttgttgctctatagtctatatatatatggattaaggagcaaacttttgtttgttgctgcagGTAAAGCCCGGGCTGAGCTCATACGCTGGACAACCCCAAGAGGCTGCAAATTCCATGCTGCCTCTTCTTGACAAGGCCAAGAGTGTCGTCCCTAAACAGC

upper sequence: LOC_Os12g03030.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G006762_T01 (Zea mays), 3'ss of exon 1
gtgagagtacttattaactgctaaagataattattatcctcctactacttaattactactactactaataaagatatataaacataatttttgtgttggttgcagGTGGATCCTGGGCTGAGCTCGTACGCTGGGCGGCCGCAAGAGGCAGCAAAATCCATAATGCCTCTGCTTGACAAGGCCAACCACGCTATCCCTATCTGGC
      |||  |||     | |  |    ||     |  ||    ||  || |  |||    ||   |||  |||  |  | || | ||||  |  | | |||||||| | || ||||||||||| |||||||| |  || |||||||| ||||| |||||  ||||||| ||||||||||||||   |||  ||||||    ||
------gtatatatatgtggtttgacggcatcgaggtgttct--atatatagt--cta----tatatatatggattaaggagcaaacttttgtttgttgctgcagGTGAAGCCCGGGCTGAGCTCATACGCTGGACATCCCCAAGAGGCTGCAAATTCCATGCTGCCTCTTCTTGACAAGGCCAAGAGCGCCGTCCCTAAACAGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattactactactactaataaagatatataaacataatttttgtgttggttgcagGTGGATCCTGGGCTGAGCTCGTACGCTGGGCGGCCGCAAGAGGCAGCAAAATCCATAATGCCTCTGCTTGACAAGGCCAACCACGCTATCCCTATCTGGC
            tactaat  putative branch site (score: 1)
      tactactactaataaa  TA-rich tract