1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ttgtgaagaaacttatttcttacacatttacattcttatttgctacaaaaatgttgatcacgatactaattcacttggcggtctccaactcattcaccagGTTCAACTGAACTTGCTGCCGTTGGAGTATCCATTTCTATCTTCAATTTGGTATCCAAGCTGCTCAATGTCCCATTGCTCAACGTCACCACATCCTTTGT
species | Oryza sativa |
transcript | LOC_Os12g01580.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGCCGACCCCATCACGGCGCTCATCGACACCGCCTTCGTTGGCCATGTCG GTTCAACTGAACTTGCTGCCGTTGGAGTATCCATTTCTATCTTCAATTTGGEST: gi|88425832|gb|CI571732.1|CI571732
genomic: CGCCGACCCCATCACGGCGCTCATCGACACCGCCTTCGTTGGCCATGTCGgtaaggacct ... cattcaccagGTTCAACTGAACTTGCTGCCGTTGGAGTATCCATTTCTATCTTCAATTTGG
EST: CGCCGACCCCATCACGGCGCTCATCGACACCGCCTTCGTTGGGCATGTCG GTTCAAGTGAAEST: gi|117243617|gb|CT843150.1|CT843150
genomic: CGCCGACCCCATCACGGCGCTCATCGACACCGCCTTCGTTGGCCATGTCGgtaaggacct ... cattcaccagGTTCAACTGAA
EST: CGCCGACCCCATCACGGCGCTCATCGACACCGCCTTCGTTGGCCATGTCG GTTCGACTGAACTTGCTGCCGTTGGAGTATCCATTTCTATCTTCAATTTGG
genomic: CGCCGACCCCATCACGGCGCTCATCGACACCGCCTTCGTTGGCCATGTCGgtaaggacct ... cattcaccagGTTCAACTGAACTTGCTGCCGTTGGAGTATCCATTTCTATCTTCAATTTGG
caaaaatgttgatcacgatactaattcacttggcggtctccaactcattcaccagGTTCAACTGAACTTGCTGCCGTTGGAGTATCCATTTCTATCTTCAATTTGGTATCCAAGCTGCTCAATGTCCCATTGCTCAACGTCACCACATCCTTTGT
tactaat putative branch site (score: 1)
ctcattc putative PPT
atactaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtgaagaaacttatttcttacacatttacattcttatttgctacaaaaatgttgatcacgatactaattcacttggcggtctccaactcattcaccagGTTCAACTGAACTTGCTGCCGTTGGAGTATCCATTTCTATCTTCAATTTGGTATCCAAGCTGCTCAATGTCCCATTGCTCAACGTCACCACATCCTTTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT