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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaccatccttggcttttttttcttgtcgatttcctttgtaactacctctgtacacttttggtacttgcaaaacagatttatgacagtgtccggttccttgtttgctcagttcattcgactctttgcataatactctcttgtttcacttatttaccatttcttttttgtaattcttaagATCAAGATTTCAATCTTTGAGGGAAGACGATGCTTCTTTACATGGTAATACCTGTCTTGAGGTGGTATGGAATCATCAATCATGTGTGCTTTCACAATCC

Basic information

species Oryza sativa
transcript LOC_Os12g01510.3
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88586124|gb|CI703809.1|CI703809
EST:     CTACTCCTACTACTATAGAGTGGATTGGAATTGGATTCCTCTCTTTACAG                         ATCAAGATTTCAATCTTTGAGGGAAGACGATGCTTCTTTACATGGTAATAC
genomic: CTACTCCTACTACTATAGAGTGGATTGGAATTGGATTCCTCTCTTTACAGgtaccatcct ... aattcttaagATCAAGATTTCAATCTTTGAGGGAAGACGATGCTTCTTTACATGGTAATAC
EST: gi|88582664|gb|CI700087.1|CI700087
EST:     CTACTCCTACTACTATAGAGTGGATTGGAATTGGATTCCTCTCTTTACAG                         ATCAAGATTTCAATCTTTGAGGGAAGACGATGCTTCTTTACATGGTAATAC
genomic: CTACTCCTACTACTATAGAGTGGATTGGAATTGGATTCCTCTCTTTACAGgtaccatcct ... aattcttaagATCAAGATTTCAATCTTTGAGGGAAGACGATGCTTCTTTACATGGTAATAC
EST: gi|88444095|gb|CI594468.1|CI594468
EST:     CTACTCCTACTACTATAGAGTGGATTGGAATTGGATTCCTCTCTTTACAG                         ATCAAGATTTCAATCTTTGAGGGAAGACGATGCTTCTTTACATGGTAATAC
genomic: CTACTCCTACTACTATAGAGTGGATTGGAATTGGATTCCTCTCTTTACAGgtaccatcct ... aattcttaagATCAAGATTTCAATCTTTGAGGGAAGACGATGCTTCTTTACATGGTAATAC
EST: gi|58607612|gb|CK035645.1|CK035645
EST:     CTACTCCTACTACTATAGAGTGGATTGGAATTGGATTCCTCTCTTTACAG                         ATCAAGATTTCAATTTTTGAGGGAAGACGATGCTTCTTTACATGGTAATAC
genomic: CTACTCCTACTACTATAGAGTGGATTGGAATTGGATTCCTCTCTTTACAGgtaccatcct ... aattcttaagATCAAGATTTCAATCTTTGAGGGAAGACGATGCTTCTTTACATGGTAATAC
EST: gi|88593154|gb|CI711312.1|CI711312
EST:     CTACTCCTACTACTATAGAGTGGATTGGAATTGGATTCCTCTCTTTACAG                         ATCAAGATTTCAATCTTTGAGGGAAGACGATGCTTCTTTACATGGTAATAC
genomic: CTACTCCTACTACTATAGAGTGGATTGGAATTGGATTCCTCTCTTTACAGgtaccatcct ... aattcttaagATCAAGATTTCAATCTTTGAGGGAAGACGATGCTTCTTTACATGGTAATAC
EST: gi|58607272|gb|CK035305.1|CK035305
EST:     CTACTCCTACTACTATAGAGTGGATTGGAATTGGATTCCTCTCTTTACAG                         ATCAAGATTTCAATTTTTGAGGGAAGACGATGCTTCTTTACATGGTAATAC
genomic: CTACTCCTACTACTATAGAGTGGATTGGAATTGGATTCCTCTCTTTACAGgtaccatcct ... aattcttaagATCAAGATTTCAATCTTTGAGGGAAGACGATGCTTCTTTACATGGTAATAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcataatactctcttgtttcacttatttaccatttcttttttgtaattcttaagATCAAGATTTCAATCTTTGAGGGAAGACGATGCTTCTTTACATGGTAATACCTGTCTTGAGGTGGTATGGAATCATCAATCATGTGTGCTTTCACAATCC
                                               ttctt  CT-rich tract
                                atttcttttttgtaat  TA-rich tract