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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tattcccatgcttgatagtagattgaatttcatagtgaagcattagtaaaagttgcacaagttttttttaaaggaaaaacaaaatgatatactgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGAGGGGTTACCAGCTGCCCCGTGACTCCCGGGGATCACTCGAGGTGTTCAA

Basic information

species Oryza sativa
transcript LOC_Os12g01140.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29627790|gb|CB632801.1|CB632801
EST:     TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAG                         GCACAAAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
genomic: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAGgtatgtacta ... actgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
EST: gi|88331906|gb|CI642131.1|CI642131
EST:     TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAG                         GCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
genomic: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAGgtatgtacta ... actgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
EST: gi|88425249|gb|CI564766.1|CI564766
EST:     TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAG                         GCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCCAG
genomic: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAGgtatgtacta ... actgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGC-AG
EST: gi|88451457|gb|CI565510.1|CI565510
EST:     TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAG                         GCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
genomic: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAGgtatgtacta ... actgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
EST: gi|29624449|gb|CB629460.1|CB629460
EST:     TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAG                         GCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
genomic: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAGgtatgtacta ... actgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
EST: gi|29622370|gb|CB627381.1|CB627381
EST:     TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAG                         GCACAAAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
genomic: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAGgtatgtacta ... actgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
EST: gi|88430048|gb|CI565061.1|CI565061
EST:     TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAG                         GCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
genomic: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAGgtatgtacta ... actgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
EST: gi|88412950|gb|CI578801.1|CI578801
EST:     TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAG                         GCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGAAGGAGA
genomic: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAGgtatgtacta ... actgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
EST: gi|29624447|gb|CB629458.1|CB629458
EST:     TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAG                         GCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
genomic: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAGgtatgtacta ... actgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
EST: gi|29633922|gb|CB638931.1|CB638931
EST:     TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAG                         GCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
genomic: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAGgtatgtacta ... actgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
EST: gi|88447494|gb|CI584609.1|CI584609
EST:     TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAG                         GCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
genomic: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAGgtatgtacta ... actgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
EST: gi|88433156|gb|CI569825.1|CI569825
EST:     TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAG                         GCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
genomic: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAGgtatgtacta ... actgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
EST: gi|29681858|gb|CB678133.1|CB678133
EST:     GGCTTCCAAAG                         GCACTGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
genomic: GGCTTCCAAAGgtatgtacta ... actgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
EST: gi|88693370|gb|CI736945.1|CI736945
EST:     TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAG                         GCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
genomic: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAGgtatgtacta ... actgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
EST: gi|88371938|gb|CI681453.1|CI681453
EST:     TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAG                         GCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
genomic: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAGgtatgtacta ... actgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
EST: gi|88420675|gb|CI564511.1|CI564511
EST:     TAGGCCAGCACAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAG                         GCACACAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
genomic: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAGgtatgtacta ... actgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
EST: gi|88576965|gb|CI673510.1|CI673510
EST:     TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAG                         GCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
genomic: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAGgtatgtacta ... actgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
EST: gi|58591355|gb|CF989663.1|CF989663
EST:     TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAG                         GCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
genomic: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAGgtatgtacta ... actgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
EST: gi|29634077|gb|CB639086.1|CB639086
EST:     TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAG                         GCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
genomic: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAGgtatgtacta ... actgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
EST: gi|88411248|gb|CI564369.1|CI564369
EST:     TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAG                         GCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
genomic: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAGgtatgtacta ... actgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
EST: gi|29668387|gb|CB664662.1|CB664662
EST:     TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAG                         GCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
genomic: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAGgtatgtacta ... actgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
EST: gi|88347634|gb|CI634319.1|CI634319
EST:     TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAG                         GCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCACCAGCAGA
genomic: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAGgtatgtacta ... actgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
EST: gi|88385871|gb|CI568539.1|CI568539
EST:     TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAG                         GCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
genomic: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAGgtatgtacta ... actgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
EST: gi|88308284|gb|CI649499.1|CI649499
EST:     TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAG                         GCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
genomic: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAGgtatgtacta ... actgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
EST: gi|88716735|gb|CI740245.1|CI740245
EST:     TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAG                         GCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
genomic: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAGgtatgtacta ... actgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
EST: gi|88407388|gb|CI583846.1|CI583846
EST:     TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAG                         GCACAGAATGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
genomic: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAGgtatgtacta ... actgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
EST: gi|88311622|gb|CI574839.1|CI574839
EST:     TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAG                         GCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGGAGCAGCAGA
genomic: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAGgtatgtacta ... actgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
EST: gi|29662103|gb|CB658378.1|CB658378
EST:     TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAG                         GCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
genomic: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAGgtatgtacta ... actgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
EST: gi|88420687|gb|CI564523.1|CI564523
EST:     TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAG                         GCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
genomic: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAGgtatgtacta ... actgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
EST: gi|88416946|gb|CI573661.1|CI573661
EST:     TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAG                         GCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
genomic: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAGgtatgtacta ... actgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
EST: gi|88389167|gb|CI597965.1|CI597965
EST:     TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAG                         GCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCCAGCAG
genomic: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAGgtatgtacta ... actgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGC-AGCAG
EST: gi|88417439|gb|CI579100.1|CI579100
EST:     TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAG                         GCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
genomic: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAGgtatgtacta ... actgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
EST: gi|88851857|gb|CI679415.1|CI679415
EST:     TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAG                         GCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
genomic: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAGgtatgtacta ... actgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
EST: gi|29668422|gb|CB664697.1|CB664697
EST:     TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAG                         GCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
genomic: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAGgtatgtacta ... actgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
EST: gi|88449240|gb|CI582112.1|CI582112
EST:     TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAG                         GCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
genomic: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAGgtatgtacta ... actgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
EST: gi|29641852|gb|CB646859.1|CB646859
EST:     TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAG                         GCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
genomic: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAGgtatgtacta ... actgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
EST: gi|88387493|gb|CI583011.1|CI583011
EST:     TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAG                         GCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
genomic: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAGgtatgtacta ... actgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
EST: gi|88377316|gb|CI600471.1|CI600471
EST:     TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAG                         GCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
genomic: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAGgtatgtacta ... actgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
EST: gi|88386099|gb|CI570734.1|CI570734
EST:     TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAG                         GCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
genomic: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAGgtatgtacta ... actgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
EST: gi|88315897|gb|CI618773.1|CI618773
EST:     TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAG                         GCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
genomic: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAGgtatgtacta ... actgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
EST: gi|88428420|gb|CI564888.1|CI564888
EST:     TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAG                         GCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
genomic: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAGgtatgtacta ... actgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
EST: gi|88430698|gb|CI596812.1|CI596812
EST:     TAGGCCAGCACAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAG                         GCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
genomic: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAGgtatgtacta ... actgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
EST: gi|29624476|gb|CB629487.1|CB629487
EST:     TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAG                         GCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
genomic: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAGgtatgtacta ... actgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
EST: gi|88422492|gb|CI571474.1|CI571474
EST:     TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAG                         GCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
genomic: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAGgtatgtacta ... actgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
EST: gi|29621737|gb|CB626748.1|CB626748
EST:     TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAG                         GCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
genomic: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAGgtatgtacta ... actgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
EST: gi|88693318|gb|CI736893.1|CI736893
EST:     TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAG                         GCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
genomic: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAGgtatgtacta ... actgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
EST: gi|88376948|gb|CI639273.1|CI639273
EST:     TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAG                         GCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA
genomic: TAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAGgtatgtacta ... actgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 45 (upstream exon), 52 (downstream exon)
Score: 8

ATTAATTTGAGTTGAGATCGACTTGAGAGCTAGCAGAGGCTCATCTCATCTAGGCCAGCAGAGGCTCTTCGCTCGCTTATTTCATCCATGGCTTCCAAAGgtatgtacta ... actgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGAGGGGTTACCAGCTGCCCCGTGACTCCCGGGGATCACTCGAGGTGTTCAA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaaaagttgcacaagttttttttaaaggaaaaacaaaatgatatactgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGAGGGGTTACCAGCTGCCCCGTGACTCCCGGGGATCACTCGAGGTGTTCAA
                ttttttttaaaggaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tattcccatgcttgatagtagattgaatttcatagtgaagcattagtaaaagttgcacaagttttttttaaaggaaaaacaaaatgatatactgttgcagGCACAGAAGGAGGCCATGGTGGCGTGGAGAGAAAGGAGCAGCAGCAGCAGAGGGGTTACCAGCTGCCCCGTGACTCCCGGGGATCACTCGAGGTGTTCAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC