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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaactcgatgcgttttactgatgtaatattgtctgaatatttctgatgctgattatttttgtggaggaacttatgctttgtcatgtgtttgtttgtacagGCACCTTTGGTAAGACCATATTTTGTGCCATTTGTGATTCTCTCATGGGATGGATCGTGCTTAGCAGTTGTTCAGAAAGTACACCTTGGTATAGTGTACA

Basic information

species Oryza sativa
transcript LOC_Os11g44870.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29637809|gb|CB642818.1|CB642818
EST:     CACTCAACTGGGTGAGACATCTGAATAAAGCCGATCCATCCTGCAAAGAG                         GCACCTTTGGTAAGACCATATTTTGTGCCATTTGTGATTCTCTCATGGGAT
genomic: CACTCAACTGGGTGAGACATCTGAATAAAGCCGATCCATCCTGCAAAGAGgtacagcaag ... gtttgtacagGCACCTTTGGTAAGACCATATTTTGTGCCATTTGTGATTCTCTCATGGGAT
EST: gi|29655751|gb|CB652026.1|CB652026
EST:     CACTCAACTGGGTGAGACATCTGAATAAAGCCGATCCATCCTGCAAAGAG                         GCACCTTTGGTAAGACCATATTTTGTGCCATTTGTGATTCTCTCATGGGAT
genomic: CACTCAACTGGGTGAGACATCTGAATAAAGCCGATCCATCCTGCAAAGAGgtacagcaag ... gtttgtacagGCACCTTTGGTAAGACCATATTTTGTGCCATTTGTGATTCTCTCATGGGAT
EST: gi|58606220|gb|CK034253.1|CK034253
EST:     CACTCAACTGGGTGAGACATCTGAATAAAGCCGATCCATCCTGCAAAGAG                         GCACCTTTGGTAAGACCATATTTTGTGCCATTTGTGATTCTCTCATGGGAT
genomic: CACTCAACTGGGTGAGACATCTGAATAAAGCCGATCCATCCTGCAAAGAGgtacagcaag ... gtttgtacagGCACCTTTGGTAAGACCATATTTTGTGCCATTTGTGATTCTCTCATGGGAT
EST: gi|29635495|gb|CB640504.1|CB640504
EST:     CACTCAACTGGGTGAGACATCTGAATAAAGCCGATCCATCCTGCAAAGAG                         GCACCTTTGGTAAGACCATATTTTGTGCCATTTGTGATTCTCTCATGGGAT
genomic: CACTCAACTGGGTGAGACATCTGAATAAAGCCGATCCATCCTGCAAAGAGgtacagcaag ... gtttgtacagGCACCTTTGGTAAGACCATATTTTGTGCCATTTGTGATTCTCTCATGGGAT
EST: gi|33662406|gb|CF293373.1|CF293373
EST:     CACTCAACTGGGTGAGACATCTGAATAAAGCCGATCCATCCTGCAAAGAG                         GCACCTTTGGTAAGACCATATTTTGTGCCATTTGTGATTCTCTCATGGGAT
genomic: CACTCAACTGGGTGAGACATCTGAATAAAGCCGATCCATCCTGCAAAGAGgtacagcaag ... gtttgtacagGCACCTTTGGTAAGACCATATTTTGTGCCATTTGTGATTCTCTCATGGGAT
EST: gi|29658430|gb|CB654705.1|CB654705
EST:     CACTCAACTGGGTGAGACATCTGAATAAAGCCGATCCATCCTGCAAAGAG                         GCACCTTTGGTAAGACCATATTTTGTGCCATTTGTGATTCTCTCATGGGAT
genomic: CACTCAACTGGGTGAGACATCTGAATAAAGCCGATCCATCCTGCAAAGAGgtacagcaag ... gtttgtacagGCACCTTTGGTAAGACCATATTTTGTGCCATTTGTGATTCTCTCATGGGAT
EST: gi|117227364|gb|CT846561.1|CT846561
EST:     CACTCAACTGGGTGAGACATCTGAATAAAGCCGATCCATCCTGCAAAGAG                         GCACCTTTGGTAAGACCATATTTTTGTGCCATTTGTGATTCTCTCATGGGA
genomic: CACTCAACTGGGTGAGACATCTGAATAAAGCCGATCCATCCTGCAAAGAGgtacagcaag ... gtttgtacagGCACCTTTGGTAAGACCATATTTT-GTGCCATTTGTGATTCTCTCATGGGA
EST: gi|29686868|gb|CB683143.1|CB683143
EST:     CACTCAACTGGGTGAGACATCTGAATAAAGCCGATCCATCCTGCAAAGAG                         GCACCTTTGGTAAGACCATATTTTGTGCCATTTGTGATTCTCTCATGGGAT
genomic: CACTCAACTGGGTGAGACATCTGAATAAAGCCGATCCATCCTGCAAAGAGgtacagcaag ... gtttgtacagGCACCTTTGGTAAGACCATATTTTGTGCCATTTGTGATTCTCTCATGGGAT
EST: gi|29638256|gb|CB643265.1|CB643265
EST:     CACTCAACTGGGTGAGACATCTGAATAAAGCCGATCCATCCTGCAAAGAG                         GCACCTTTGGTAAGACCATATTTTGTGCCATTTGTGATTCTCTCATGGGAT
genomic: CACTCAACTGGGTGAGACATCTGAATAAAGCCGATCCATCCTGCAAAGAGgtacagcaag ... gtttgtacagGCACCTTTGGTAAGACCATATTTTGTGCCATTTGTGATTCTCTCATGGGAT
EST: gi|33682759|gb|CF310998.1|CF310998
EST:     CACTCAACTGGGTGAGACATCTGAATAAAGCCGATCCATCCTGCAAAGAG                         GCACCTTTGGTAAGACCATATTTTGTGCCATTTGTGATTCTCTCATGGGAT
genomic: CACTCAACTGGGTGAGACATCTGAATAAAGCCGATCCATCCTGCAAAGAGgtacagcaag ... gtttgtacagGCACCTTTGGTAAGACCATATTTTGTGCCATTTGTGATTCTCTCATGGGAT
EST: gi|29680360|gb|CB676635.1|CB676635
EST:     CACTCAACTGGGTGAGACATCTGAATAAAGCCGATCCATCCTGCAAAGAG                         GCACCTTTGGTAAGACCATATTTTGTGCCATTTGTGATTCTCTCATGGGAT
genomic: CACTCAACTGGGTGAGACATCTGAATAAAGCCGATCCATCCTGCAAAGAGgtacagcaag ... gtttgtacagGCACCTTTGGTAAGACCATATTTTGTGCCATTTGTGATTCTCTCATGGGAT
EST: gi|33662407|gb|CF293374.1|CF293374
EST:     CACTCAACTGGGTGAGACATCTGAATAAAGCCGATCCATCCTGCAAAGAG                         GCACCTTTGGTAAGACCATATTTTGTGCCATTTGTGATTCTCTCATGGGAT
genomic: CACTCAACTGGGTGAGACATCTGAATAAAGCCGATCCATCCTGCAAAGAGgtacagcaag ... gtttgtacagGCACCTTTGGTAAGACCATATTTTGTGCCATTTGTGATTCTCTCATGGGAT
EST: gi|29660660|gb|CB656935.1|CB656935
EST:     CACTCAACTGGGTGAGACATCTGAATAAAGCCGATCCATCCTGCAAAGAG                         GCACCTTTGGTAAGACCATATTTTGTGCCATTTGTGATTCTCTCATGGGAT
genomic: CACTCAACTGGGTGAGACATCTGAATAAAGCCGATCCATCCTGCAAAGAGgtacagcaag ... gtttgtacagGCACCTTTGGTAAGACCATATTTTGTGCCATTTGTGATTCTCTCATGGGAT
EST: gi|29672235|gb|CB668510.1|CB668510
EST:     CACTCAGCTGGGTGAGACATCTGAATAAAGCCGATCCATCCTGCAAAGAG                         GCACCTTTGGTAAGACCATATTTTGTGCCATTTGTGATTCTCTCATGGGAT
genomic: CACTCAACTGGGTGAGACATCTGAATAAAGCCGATCCATCCTGCAAAGAGgtacagcaag ... gtttgtacagGCACCTTTGGTAAGACCATATTTTGTGCCATTTGTGATTCTCTCATGGGAT
EST: gi|29677943|gb|CB674218.1|CB674218
EST:     CACTCAACTGGGTGAGACATCTGAATAAAGCCGATCCATCCTGCAAAGAG                         GCACCTTTGGTAAGACCATATTTTGTGCCATTTGTGATTCTCTCATGGGAT
genomic: CACTCAACTGGGTGAGACATCTGAATAAAGCCGATCCATCCTGCAAAGAGgtacagcaag ... gtttgtacagGCACCTTTGGTAAGACCATATTTTGTGCCATTTGTGATTCTCTCATGGGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgctgattatttttgtggaggaacttatgctttgtcatgtgtttgtttgtacagGCACCTTTGGTAAGACCATATTTTGTGCCATTTGTGATTCTCTCATGGGATGGATCGTGCTTAGCAGTTGTTCAGAAAGTACACCTTGGTATAGTGTACA
 tgctgat  putative branch site (score: 3)
                                          tttgttt  putative PPT
      attatttttgt  TA-rich tract