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...tgatattgtactgtagtagccattattttctcctgttcataagctaacattttcttgatgttagtatttctgatggaaactggcatttgtgttgtaacagGAACTGGGAATACTGCAGTTCTCGTCTTATACTAGGCTACTAGCACTCCTCTGATCTGATGGCCAACATTAACATGGCAGATACTGTTCCTTCCTGTGAT
species | Oryza sativa |
transcript | LOC_Os11g43860.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCTCCAAGAAGTTTGGGAGGGATCCCCTTTGATCTTAAACAAATGCCCAA GAACTGGGAATACTGCAGTTCTCGTCTTATACTAGGCTANTAGCACTCCTCEST: gi|88419512|gb|CI686727.1|CI686727
genomic: TCTCCAAGAAGTTTGGGAGGGATCCCCTTTGATCTTAAACAAATGCCCAAgttcgtcgca ... gttgtaacagGAACTGGGAATACTGCAGTTCTCGTCTTATACTAGGCTACTAGCACTCCTC
EST: TCTCCAAGAAGTTTGGGAGGGATCCCCTTTGATCTTAAACAAATGCCCAA GAACTGGGAATACTGCAGTTCTCGTCTTATACTAGGCTACTAGCACTCCTCEST: gi|88467230|gb|CI696594.1|CI696594
genomic: TCTCCAAGAAGTTTGGGAGGGATCCCCTTTGATCTTAAACAAATGCCCAAgttcgtcgca ... gttgtaacagGAACTGGGAATACTGCAGTTCTCGTCTTATACTAGGCTACTAGCACTCCTC
EST: TCTCCAAGAAGTTTGGGAGGGATCCCCTTTGATCTTAAACAAATGCCCAA GAACTGGGAATACTGCAGTTCTCGTCTTATACTAGGCTACTAGCACTCCTCEST: gi|88429003|gb|CI689881.1|CI689881
genomic: TCTCCAAGAAGTTTGGGAGGGATCCCCTTTGATCTTAAACAAATGCCCAAgttcgtcgca ... gttgtaacagGAACTGGGAATACTGCAGTTCTCGTCTTATACTAGGCTACTAGCACTCCTC
EST: TCTCCAAGAAGTTTGGGAGGGATCCCCTTTGATCTTAAACAAATGCCCAA GAACTGGGAATACTGCAGTTCTCGTCTTATACTAGGCTACTAGCACTCCTC
genomic: TCTCCAAGAAGTTTGGGAGGGATCCCCTTTGATCTTAAACAAATGCCCAAgttcgtcgca ... gttgtaacagGAACTGGGAATACTGCAGTTCTCGTCTTATACTAGGCTACTAGCACTCCTC
aacattttcttgatgttagtatttctgatggaaactggcatttgtgttgtaacagGAACTGGGAATACTGCAGTTCTCGTCTTATACTAGGCTACTAGCACTCCTCTGATCTGATGGCCAACATTAACATGGCAGATACTGTTCCTTCCTGTGAT
ttagtattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgatattgtactgtagtagccattattttctcctgttcataagctaacattttcttgatgttagtatttctgatggaaactggcatttgtgttgtaacagGAACTGGGAATACTGCAGTTCTCGTCTTATACTAGGCTACTAGCACTCCTCTGATCTGATGGCCAACATTAACATGGCAGATACTGTTCCTTCCTGTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - tgtactg
- - - - - - - - - - - - - - -ctcctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatttg