1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ggatccactagttcatgcctcaattttttttctcctcttttaagttttccaaagagctacattgttgtaaagtgtctaatacaattgattgtttattcagGTTAGCGCTTTTGGCGTGTGATTGATTTCTAAACGAATTTTGGGCCGTGAAGGGAAGTTCAATCATGGCAGGGTCTCTTGCCGCCTCAGCATTCTTCCCA
species | Oryza sativa |
transcript | LOC_Os11g43820.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCGATCTCCATCGCCGAGGAGAGCAGAGCAGGGGAGGGGAGGGGATCCTG GTTAGCGCTTTTGGCGTGTGATTGATTTCTAAACGAATTTTGGGCCGTGAAEST: gi|88312515|gb|CI585038.1|CI585038
genomic: CCGATCTCCATCGCCGAGGAGAGCAGAGCAGGGGAGGGGAGGGGATCCTGgtgagcctcc ... gtttattcagGTTAGCGCTTTTGGCGTGTGATTGATTTCTAAACGAATTTTGGGCCGTGAA
EST: CCGATCTCCATCGCCGAGGAGAGCAGAGCAGGGGAGGGGAGGGGATCCTG GTTAGCGCTTTTGGCGTGTGATTGATTTCTAAACGAATTTTGGGCCGTGAAEST: gi|88689956|gb|CI734035.1|CI734035
genomic: CCGATCTCCATCGCCGAGGAGAGCAGAGCAGGGGAGGGGAGGGGATCCTGgtgagcctcc ... gtttattcagGTTAGCGCTTTTGGCGTGTGATTGATTTCTAAACGAATTTTGGGCCGTGAA
EST: CCGATCTCCATCGCCGAGGAGAGCAGAGCAGGGGAGGGGAGGGGATCCTG GTTAGCGCTTTTGGCGTGTGATTGATTTCTAAACGAATTTTGGGCCGTGAAEST: gi|29637240|gb|CB642249.1|CB642249
genomic: CCGATCTCCATCGCCGAGGAGAGCAGAGCAGGGGAGGGGAGGGGATCCTGgtgagcctcc ... gtttattcagGTTAGCGCTTTTGGCGTGTGATTGATTTCTAAACGAATTTTGGGCCGTGAA
EST: CCGATCTCCATCGCCGAGGAGAGCAGAGCAGGGGAGGGGAGGGGATCCTG GTTAGCGCTTTTGGCGTGTGATTGATTTCTAAACGAATTTTGGGCCGTGAAEST: gi|58668862|gb|CK057548.1|CK057548
genomic: CCGATCTCCATCGCCGAGGAGAGCAGAGCAGGGGAGGGGAGGGGATCCTGgtgagcctcc ... gtttattcagGTTAGCGCTTTTGGCGTGTGATTGATTTCTAAACGAATTTTGGGCCGTGAA
EST: CCGATCTCCATCGCCGAGGAGAGCAGAGCAGGGGAGGGGAGGGGATCCTG GTTAGCGCTTTTGGCGTGTGATTGATTTCTAAACGAATTTTGGGCCGTGAAEST: gi|88399649|gb|CI583383.1|CI583383
genomic: CCGATCTCCATCGCCGAGGAGAGCAGAGCAGGGGAGGGGAGGGGATCCTGgtgagcctcc ... gtttattcagGTTAGCGCTTTTGGCGTGTGATTGATTTCTAAACGAATTTTGGGCCGTGAA
EST: CCGATCTCCATCGCCGAGGAGAGCAGAGCAGGGGAGGGGAGGGGATCCTG GTTAGCGCTTTTGGCGTGTGATTGATTTCTAAACGAATTTTGGGCCGTGAAEST: gi|58669806|gb|CK058492.1|CK058492
genomic: CCGATCTCCATCGCCGAGGAGAGCAGAGCAGGGGAGGGGAGGGGATCCTGgtgagcctcc ... gtttattcagGTTAGCGCTTTTGGCGTGTGATTGATTTCTAAACGAATTTTGGGCCGTGAA
EST: CCGATCTCCATCGCCGAGGAGAGCAGAGCAGGGGAGGGGAGGGGATCCTG GTTAGCGCTTTTGGCGTGTGATTGATTTCTAAACGAATTTTGGGCCGTGAAEST: gi|88720848|gb|CI744147.1|CI744147
genomic: CCGATCTCCATCGCCGAGGAGAGCAGAGCAGGGGAGGGGAGGGGATCCTGgtgagcctcc ... gtttattcagGTTAGCGCTTTTGGCGTGTGATTGATTTCTAAACGAATTTTGGGCCGTGAA
EST: CCGATCTCCATCGCCGAGGAGAGCAGAGCAGGGGAGGGGAGGGGATCCTG GTTAGCGCTTTTGGCGTGTGATTGATTTCTAAACGAATTTTGGGCCGTGAAEST: gi|88695784|gb|CI737361.1|CI737361
genomic: CCGATCTCCATCGCCGAGGAGAGCAGAGCAGGGGAGGGGAGGGGATCCTGgtgagcctcc ... gtttattcagGTTAGCGCTTTTGGCGTGTGATTGATTTCTAAACGAATTTTGGGCCGTGAA
EST: CCGATCTCCATCGCCGAGGAGAGCAGAGCAGGGGAGGGGAGGGGATCCTG GTTAGCGCTTTTGGCGTGTGATTGATTTCTAAACGAATTTTGGGCCGTGAAEST: gi|88718369|gb|CI741458.1|CI741458
genomic: CCGATCTCCATCGCCGAGGAGAGCAGAGCAGGGGAGGGGAGGGGATCCTGgtgagcctcc ... gtttattcagGTTAGCGCTTTTGGCGTGTGATTGATTTCTAAACGAATTTTGGGCCGTGAA
EST: CCGATCTCCATCGCCGAGGAGAGCAGAGCAGGGGAGGGGAGGGGATCCTG GTTAGCGCTTTTGGCGTGTGATTGATTTCTAAACGAATTTTGGGCCGTGAAEST: gi|88391346|gb|CI598164.1|CI598164
genomic: CCGATCTCCATCGCCGAGGAGAGCAGAGCAGGGGAGGGGAGGGGATCCTGgtgagcctcc ... gtttattcagGTTAGCGCTTTTGGCGTGTGATTGATTTCTAAACGAATTTTGGGCCGTGAA
EST: CCGATCTCCATCGCCGAGGAGAGCAGAGCAGGGGAGGGGAGGGGATCCTG GTTAGCGCTTTTGGCGTGTGATTGATTTCTAAACGAATTTTGGGCCGTGAAEST: gi|58655487|gb|CK044167.1|CK044167
genomic: CCGATCTCCATCGCCGAGGAGAGCAGAGCAGGGGAGGGGAGGGGATCCTGgtgagcctcc ... gtttattcagGTTAGCGCTTTTGGCGTGTGATTGATTTCTAAACGAATTTTGGGCCGTGAA
EST: CCGATCTCCATCGCCGAGGAGAGCAGAGCAGGGGAGGGGAGGGGATCCTG GTTAGCGCTTTTGGCGTGTGATTGATTTCTAAACGAATTTTGGGCCGTGAAEST: gi|58662816|gb|CK051502.1|CK051502
genomic: CCGATCTCCATCGCCGAGGAGAGCAGAGCAGGGGAGGGGAGGGGATCCTGgtgagcctcc ... gtttattcagGTTAGCGCTTTTGGCGTGTGATTGATTTCTAAACGAATTTTGGGCCGTGAA
EST: CCGATCTCCATCGCCGAGGAGAGCAGAGCAGGGGAGGGGAGGGGATCCTG GTTAGCGCTTTTGGCGTGTGATTGATTTCTAAACGAATTTTGGGCCGTGAAEST: gi|88422489|gb|CI571471.1|CI571471
genomic: CCGATCTCCATCGCCGAGGAGAGCAGAGCAGGGGAGGGGAGGGGATCCTGgtgagcctcc ... gtttattcagGTTAGCGCTTTTGGCGTGTGATTGATTTCTAAACGAATTTTGGGCCGTGAA
EST: CCGATCTCCATCGCCGAGGAGAGCAGAGCAGGGGAGGGGAGGGGATCCTG GTTAGCGCTTTTGGCGTGTGATTGATTTCTAAACGAATTTTGGGCCGTGAAEST: gi|88422742|gb|CI573904.1|CI573904
genomic: CCGATCTCCATCGCCGAGGAGAGCAGAGCAGGGGAGGGGAGGGGATCCTGgtgagcctcc ... gtttattcagGTTAGCGCTTTTGGCGTGTGATTGATTTCTAAACGAATTTTGGGCCGTGAA
EST: CCGATCTCCATCGCCGAGGAGAGCAGAGCAGGGGAGGGGAGGGGATCCTG GTTAGCGCTTTTGGCGTGTGATTGATTTCTAAACGAATTTTGGGCCGTGAAEST: gi|88718962|gb|CI742472.1|CI742472
genomic: CCGATCTCCATCGCCGAGGAGAGCAGAGCAGGGGAGGGGAGGGGATCCTGgtgagcctcc ... gtttattcagGTTAGCGCTTTTGGCGTGTGATTGATTTCTAAACGAATTTTGGGCCGTGAA
EST: CCGATCTCCATCGCCGAGGAGAGCAGAGCAGGGGAGGGGAGGGGATCCTG GTTAGCGCTTTTGGCGTGTGATTGATTTCTAAACGAATTTTGGGCCGTGAAEST: gi|88404165|gb|CI575653.1|CI575653
genomic: CCGATCTCCATCGCCGAGGAGAGCAGAGCAGGGGAGGGGAGGGGATCCTGgtgagcctcc ... gtttattcagGTTAGCGCTTTTGGCGTGTGATTGATTTCTAAACGAATTTTGGGCCGTGAA
EST: CCGATCTCCATCGCCGAGGAGAGCAGAGCAGGGGAGGGGAGGGGATCCTG GTTAGCGCTTTTGGCGTGTGATTGATTTCTAAACGAATTTTGGGCCGTGAAEST: gi|58673441|gb|CK062127.1|CK062127
genomic: CCGATCTCCATCGCCGAGGAGAGCAGAGCAGGGGAGGGGAGGGGATCCTGgtgagcctcc ... gtttattcagGTTAGCGCTTTTGGCGTGTGATTGATTTCTAAACGAATTTTGGGCCGTGAA
EST: CCGATCTCCATCGCCGAGGAGAGCAGAGCAGGGGAGGGGAGGGGATCCTG GTTAGCGCTTTTGGCGTGTGATTGATTTCTAAACGAATTTTGGGCCGTGAAEST: gi|58692890|gb|CK081577.1|CK081577
genomic: CCGATCTCCATCGCCGAGGAGAGCAGAGCAGGGGAGGGGAGGGGATCCTGgtgagcctcc ... gtttattcagGTTAGCGCTTTTGGCGTGTGATTGATTTCTAAACGAATTTTGGGCCGTGAA
EST: CCGATCTCCATCGCCGAGGAGAGCAGAGCAGGGGAGGGGAGGGGATCCTG GTTAGCGCTTTTGGCGTGTGATTGATTTCTAAACGAATTTTGGGCCGTGAAEST: gi|33686432|gb|CF314671.1|CF314671
genomic: CCGATCTCCATCGCCGAGGAGAGCAGAGCAGGGGAGGGGAGGGGATCCTGgtgagcctcc ... gtttattcagGTTAGCGCTTTTGGCGTGTGATTGATTTCTAAACGAATTTTGGGCCGTGAA
EST: CCGATCTCCATCGCCGAGGAGAGCAGAGCAGGGGAGGGGAGGGGATCCTG GTTAGCGCTTTTGGCGTGTGATTGATTTCTAAACGAATTTTGGGCCGTGAA
genomic: CCGATCTCCATCGCCGAGGAGAGCAGAGCAGGGGAGGGGAGGGGATCCTGgtgagcctcc ... gtttattcagGTTAGCGCTTTTGGCGTGTGATTGATTTCTAAACGAATTTTGGGCCGTGAA
tttccaaagagctacattgttgtaaagtgtctaatacaattgattgtttattcagGTTAGCGCTTTTGGCGTGTGATTGATTTCTAAACGAATTTTGGGCCGTGAAGGGAAGTTCAATCATGGCAGGGTCTCTTGCCGCCTCAGCATTCTTCCCA
tttattc CT-rich tract
taatacaattgattgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggatccactagttcatgcctcaattttttttctcctcttttaagttttccaaagagctacattgttgtaaagtgtctaatacaattgattgtttattcagGTTAGCGCTTTTGGCGTGTGATTGATTTCTAAACGAATTTTGGGCCGTGAAGGGAAGTTCAATCATGGCAGGGTCTCTTGCCGCCTCAGCATTCTTCCCA
-gatccac
- - - - - -ttcatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - agctaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgttgt