1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ctggaatatacgatggattgatcgaactttgtagtactatttgtgtttggtggatgcgtttgttcgacgattactgacctgattttgctgcaactgacagATATTGAGGAGCACTTGGACTGAAGAACTCAATTTTGGAGCACTTGGATTAGCATTGGCCACCCTGCTGGACTCACTGACTGTTAAAACGGCTCTGGTTT
species | Oryza sativa |
transcript | LOC_Os11g41140.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCACGGCCGGTGACTCGACTGCCTCGTCTCGGTTCGAATCGAGCTGGGAG ATATTGAGGAGCACTTGGACTGAAGAACTCAATTTTGGAGCACTTGGATTAEST: gi|58687987|gb|CK076674.1|CK076674
genomic: GCACGGCCGGTGACTCGACTGCCTCGTCTCGGTTCGAATCGAGCTGGGAGgtattgctcg ... caactgacagATATTGAGGAGCACTTGGACTGAAGAACTCAATTTTGGAGCACTTGGATTA
EST: GCACGGCCGGTGACTCGACTGCCTCGTCTCGGTTCGAATCGAGCTGGGAG ATATTGAGGAGCACTTGGACTGAAGAACTCAATTTTGGAGCACTTGGATTA
genomic: GCACGGCCGGTGACTCGACTGCCTCGTCTCGGTTCGAATCGAGCTGGGAGgtattgctcg ... caactgacagATATTGAGGAGCACTTGGACTGAAGAACTCAATTTTGGAGCACTTGGATTA
tttggtggatgcgtttgttcgacgattactgacctgattttgctgcaactgacagATATTGAGGAGCACTTGGACTGAAGAACTCAATTTTGGAGCACTTGGATTAGCATTGGCCACCCTGCTGGACTCACTGACTGTTAAAACGGCTCTGGTTT
tgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctggaatatacgatggattgatcgaactttgtagtactatttgtgtttggtggatgcgtttgttcgacgattactgacctgattttgctgcaactgacagATATTGAGGAGCACTTGGACTGAAGAACTCAATTTTGGAGCACTTGGATTAGCATTGGCCACCCTGCTGGACTCACTGACTGTTAAAACGGCTCTGGTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - ttgtgtt
- - - - - - - - - - - - - - - - - - - - - - - - - tggatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgacctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttgctg