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...atagctagttttatagcaacttttgttggttcccggcagtaccacatatgtcaatatgtaccagtaacagatagtaatatctagctgtcattatgtgcagAATTATCCCTATGCAGGCACCTGTTATCAGAAGGCATGGGAGAAGATGCTGCATGCAAAGCATTCGATGCAGAGAAGGTAACCTTAGAGAAGTTTCGTGC
species | Oryza sativa |
transcript | LOC_Os11g40080.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CAGCGCAATAGCTGATAACCTGAAAATAGATCCATTCAATCCTTGTGTGG AATTATCCCTATGCAGGCACCTGTTATCAGAAGGCATGGGAGAAGATGCTGEST: gi|29667118|gb|CB663393.1|CB663393
genomic: CAGCGCAATAGCTGATAACCTGAAAATAGATCCATTCAATCCTTGTGTGGgtaagctctt ... ttatgtgcagAATTATCCCTATGCAGGCACCTGTTATCAGAAGGCATGGGAGAAGATGCTG
EST: CAGCGCAATAGCTGATAACCTGAAAATAGATCCATTCAATCCTTGTGTGG AATTATCCCTATGCAGGCACCTGTTATCAGAAGGCATGGGAGAAGATGCTG
genomic: CAGCGCAATAGCTGATAACCTGAAAATAGATCCATTCAATCCTTGTGTGGgtaagctctt ... ttatgtgcagAATTATCCCTATGCAGGCACCTGTTATCAGAAGGCATGGGAGAAGATGCTG
atatgtcaatatgtaccagtaacagatagtaatatctagctgtcattatgtgcagAATTATCCCTATGCAGGCACCTGTTATCAGAAGGCATGGGAGAAGATGCTGCATGCAAAGCATTCGATGCAGAGAAGGTAACCTTAGAGAAGTTTCGTGC
cagtaac putative branch site (score: 31)
atagtaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atagctagttttatagcaacttttgttggttcccggcagtaccacatatgtcaatatgtaccagtaacagatagtaatatctagctgtcattatgtgcagAATTATCCCTATGCAGGCACCTGTTATCAGAAGGCATGGGAGAAGATGCTGCATGCAAAGCATTCGATGCAGAGAAGGTAACCTTAGAGAAGTTTCGTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - -tttgttg
- - - - - - - - - - - - - - - -cccggca
- - - - - - - - - - - - - - - - - - - - - - catatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - -atatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgtca