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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaccttacaaaaatctctctatctgatctctctctgctatatatagagatcttcagttaatcaactatagctcatgaagcttgtagattggttctaccaattaagctaagtttaacctgaatttgtatacatatagGTCATTGTTCAGATAAGGAAATTGTTCTTCTCGAGCAAGGAAAAGATGGCGCCGTCGTCGCCACCGGCGATGAACATGGCTTGTGCGAGACAGGGACGCC

Basic information

species Oryza sativa
transcript LOC_Os11g32750.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163917847|gb|EG714741.1|EG714741
EST:     TTGGTCTTATGAAGAAGAGTTGGAGTTGTTCTTGGATTTGTCCACTTGAG                         GTCATTGTTCAGATAAGGAAATTGTTCTTCTCGAGCAAGGAAAAGATGGCG
genomic: TTGGTCTTATGAAGAAGAGTTGGAGTTGTTCTTGGATTTGTCCACTTGAGgtaaccttac ... atacatatagGTCATTGTTCAGATAAGGAAATTGTTCTTCTCGAGCAAGGAAAAGATGGCG
EST: gi|44680079|gb|AB118074.1|AB118074
EST:     TTGGTCTTATGAAGAAGAGTTGGAGTTGTTCTTGGATTTGTCCACTTGAG                         GTCATTGTTCAGATAAGGAAATTGTTCTTCTCGAGCAAGGAAAAGATGGCG
genomic: TTGGTCTTATGAAGAAGAGTTGGAGTTGTTCTTGGATTTGTCCACTTGAGgtaaccttac ... atacatatagGTCATTGTTCAGATAAGGAAATTGTTCTTCTCGAGCAAGGAAAAGATGGCG
EST: gi|86847426|gb|CI287005.1|CI287005
EST:     TTGGTCTTATGAAGAAGAGTTGGAGTTGTTCTTGGATTTGTCCACTTGAG                         GTCATTGTTCAGATAAGGAAATTGTTCTTCTCGAGCAAGGAAAAGATGGCG
genomic: TTGGTCTTATGAAGAAGAGTTGGAGTTGTTCTTGGATTTGTCCACTTGAGgtaaccttac ... atacatatagGTCATTGTTCAGATAAGGAAATTGTTCTTCTCGAGCAAGGAAAAGATGGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtagattggttctaccaattaagctaagtttaacctgaatttgtatacatatagGTCATTGTTCAGATAAGGAAATTGTTCTTCTCGAGCAAGGAAAAGATGGCGCCGTCGTCGCCACCGGCGATGAACATGGCTTGTGCGAGACAGGGACGCC
                            gtttaac  putative branch site (score: 3)
                                      aatttgtatacatata  TA-rich tract