1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtagggcctggcgaaaatcgctgcgggctctctctggtcggatccgggtgtttctcttcgtaattcttgatgagagatttggatttttctttttggacgcagGGCTACGCGCCGATCTGCCTCGGCCTGGAGGATTTCTACGTGCGCCGCCTGTACCTTCGGATCCAG
species | Oryza sativa |
transcript | LOC_Os11g31640.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGGATTTCTTCCGCAAGCTCATCGATTGGTTCAAGGCCAAGAACGTCAAG GGCTACGCGCCGATCTGCCTCGGCCTGGAGGATTTCTACGTGCGCCGCCTGEST: gi|29671690|gb|CB667965.1|CB667965
genomic: GGGATTTCTTCCGCAAGCTCATCGATTGGTTCAAGGCCAAGAACGTCAAGgtagggcctg ... ttggacgcagGGCTACGCGCCGATCTGCCTCGGCCTGGAGGATTTCTACGTGCGCCGCCTG
EST: GGGATTTCTTCCGCAAGCTCATCGATTGGTTCAAGGCCAAGAACGTCAAG GGCTACGCGCCGATCTGCCTCGGCCTGGAGGATTTCTACGTGCGCCGCCTGEST: gi|58690713|gb|CK079400.1|CK079400
genomic: GGGATTTCTTCCGCAAGCTCATCGATTGGTTCAAGGCCAAGAACGTCAAGgtagggcctg ... ttggacgcagGGCTACGCGCCGATCTGCCTCGGCCTGGAGGATTTCTACGTGCGCCGCCTG
EST: GGGATTTCTTCCGCAAGCTCATCGATTGGTTCAAGGCCAAGAACGTCAAG GGCTACGCGCCGATCTGCCTCGGCCTGGAGGATTTCTACGTGCGCCGCCTGEST: gi|29615691|gb|CB620703.1|CB620703
genomic: GGGATTTCTTCCGCAAGCTCATCGATTGGTTCAAGGCCAAGAACGTCAAGgtagggcctg ... ttggacgcagGGCTACGCGCCGATCTGCCTCGGCCTGGAGGATTTCTACGTGCGCCGCCTG
EST: GGGATTTCTTCCGCAAGCTCATCGATTGGTTCAAGGCCAAGAACGTCAAG GGCTACGCGCCGATCTGCCTCGGCCTGGAGGATTTCTACGTGCGCCGCCTGEST: gi|29672756|gb|CB669031.1|CB669031
genomic: GGGATTTCTTCCGCAAGCTCATCGATTGGTTCAAGGCCAAGAACGTCAAGgtagggcctg ... ttggacgcagGGCTACGCGCCGATCTGCCTCGGCCTGGAGGATTTCTACGTGCGCCGCCTG
EST: GGGATTTCTTCCGCAAGCTCATCGATTGGTTCAAGGCCAAGAACGTCAAG GGCTACGCGCCGATCTGCCTCGGCCTGGAGGATTTCTACGTGCGCCGCCTGEST: gi|163928499|gb|EG711384.1|EG711384
genomic: GGGATTTCTTCCGCAAGCTCATCGATTGGTTCAAGGCCAAGAACGTCAAGgtagggcctg ... ttggacgcagGGCTACGCGCCGATCTGCCTCGGCCTGGAGGATTTCTACGTGCGCCGCCTG
EST: GGGATTTCTTCCGCAAGCTCATCGATTGGTTCAAGGCCAAGAACGTCAAG GGCTACGCGCCGATCTGCCTCGGCCTGGAGGATTTCTACGTGCGCCGCCTGEST: gi|33681956|gb|CF310195.1|CF310195
genomic: GGGATTTCTTCCGCAAGCTCATCGATTGGTTCAAGGCCAAGAACGTCAAGgtagggcctg ... ttggacgcagGGCTACGCGCCGATCTGCCTCGGCCTGGAGGATTTCTACGTGCGCCGCCTG
EST: GGGATTTCTTCCTCAAGCTCATCGATTGGTTCAAGGCCAAGAACGTCAAG GGCTACGCGCCGATCTGCCTCGGCCTGGAGGATTTCTACGTGCGCCGCCTGEST: gi|29628851|gb|CB633862.1|CB633862
genomic: GGGATTTCTTCCGCAAGCTCATCGATTGGTTCAAGGCCAAGAACGTCAAGgtagggcctg ... ttggacgcagGGCTACGCGCCGATCTGCCTCGGCCTGGAGGATTTCTACGTGCGCCGCCTG
EST: GGGATTTCTTCCGCAAGCTCATCGATTGGTTCAAGGCCAAGAACGTCAAG GGCTACGCGCCGATCTGCCTCGGCCTGGAGGATTTCTACGTGCGCCGCCTCEST: gi|58653726|gb|CK042406.1|CK042406
genomic: GGGATTTCTTCCGCAAGCTCATCGATTGGTTCAAGGCCAAGAACGTCAAGgtagggcctg ... ttggacgcagGGCTACGCGCCGATCTGCCTCGGCCTGGAGGATTTCTACGTGCGCCGCCTG
EST: GGGATTTCTTCCGCAAGCTCATCGATTGGTTCAAGGCCAAGAACGTCAAG GGCTACGCGCCGATCTGCCTCGGCCTGGAGGATTTCTACGTGCGCCGCCTGEST: gi|88443703|gb|CI591928.1|CI591928
genomic: GGGATTTCTTCCGCAAGCTCATCGATTGGTTCAAGGCCAAGAACGTCAAGgtagggcctg ... ttggacgcagGGCTACGCGCCGATCTGCCTCGGCCTGGAGGATTTCTACGTGCGCCGCCTG
EST: GGGATTTCTTCCGAAAGCTCATCGATTGGTTCAAGGCCAAGAACGTCAAG GGCTACGCGCCGATCTGCCTCGGCCTGGAGGATTTCTACGTGCGCCGCCTG
genomic: GGGATTTCTTCCGCAAGCTCATCGATTGGTTCAAGGCCAAGAACGTCAAGgtagggcctg ... ttggacgcagGGCTACGCGCCGATCTGCCTCGGCCTGGAGGATTTCTACGTGCGCCGCCTG
gtgtttctcttcgtaattcttgatgagagatttggatttttctttttggacgcagGGCTACGCGCCGATCTGCCTCGGCCTGGAGGATTTCTACGTGCGCCGCCTGTACCTTCGGATCCAG
tcttgat putative branch site (score: 12)
tttttcttttt putative PPT
atttttcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagggcctggcgaaaatcgctgcgggctctctctggtcggatccgggtgtttctcttcgtaattcttgatgagagatttggatttttctttttggacgcagGGCTACGCGCCGATCTGCCTCGGCCTGGAGGATTTCTACGTGCGCCGCCTGTACCTTCGGATCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT