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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaacaagaacccgtgaaagttcagatctttgggcaaaaaatgttgtttttcttggacaaatcttgtgaaaaaagttgctgcttttttttttctgcagGCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGGGTGAGGAATCTGGCTCTTTCATCATCGCTAAATCTGA

Basic information

species Oryza sativa
transcript LOC_Os11g28300.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58595287|gb|CF993595.1|CF993595
EST:     ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTG                         GCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
genomic: ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTGgtaagaacaa ... ttttctgcagGCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
EST: gi|58587682|gb|CF985990.1|CF985990
EST:     ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTG                         GCGGTCGCCGAGGACGGCGAATCGA
genomic: ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTGgtaagaacaa ... ttttctgcagGCGGTCGCCGAGGACGGCGAATCGA
EST: gi|88725872|gb|CI747384.1|CI747384
EST:     ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTG                         GCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
genomic: ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTGgtaagaacaa ... ttttctgcagGCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
EST: gi|88731527|gb|CI755140.1|CI755140
EST:     ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTG                         GCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
genomic: ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTGgtaagaacaa ... ttttctgcagGCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtttttcttggacaaatcttgtgaaaaaagttgctgcttttttttttctgcagGCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGGGTGAGGAATCTGGCTCTTTCATCATCGCTAAATCTGA
                                ttgctgcttttttttt  CT-rich tract
                                       ttttttttttct  TA-rich tract