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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgtaccacttaattaattaccacccctcctatgaatttttgcctcaaactctcatctcatctcttctccctatatatatgtcgtcgaagGCGGTGCCGCGGCGGCAACGGGTGCAAGGTCGGCGACGACAACGGCAGCCT

Basic information

species Oryza sativa
transcript LOC_Os11g25920.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g25920.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G132251_T01 (Zea mays), 3'ss of exon 1
-----------------------------------------------------------------------------------gtatgtgtaccacttaattaattaccacccctcc-tatgaatttttgcctcaaactctcatct--catctc------------ttctccctatata-tatgtcgtcgaa----gGCGGTGCCGCGGCGGCAACGGGTGCAAGGTCGGCGACGACAACGGCAGCCT
                                                                                   || | ||  |  ||    |  |||  |  || || | | |        | ||| | |   | |  |||| |            |  |  || | || ||| ||   | |    |||||||||||||||| |||||||||||||||||||||||||||||||||||
gtatgtgatgtgtgcctctccctgtccttattccgtccggacaccgacgaatgaactcgtccgtcctactatagctagctattgtctttgctcttctctgcttgttattatgccgccgtctaagcccacaacacaagccccagtttgtcatcacaggcacagcgagtgatgactgtgtactatttccctgcatgcagGCGGTGCCGCGGCGGGAACGGGTGCAAGGTCGGCGACGACAACGGCAGCCT

upper sequence: LOC_Os11g25920.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G302293_T01 (Zea mays), 3'ss of exon 1
gtatgtgtaccacttaattaattaccacccctcctatgaatttttgcctcaaactctcatct-catctcttctccctatatatatgtcgtcgaagGCGGTGCCGCGGCGGCAACGGGTGCAAGGTCGGCGACGACAACGGCAGCCT
    || |  |||     |   | ||   | |  |||    | | ||      |||||| || ||  ||   |   ||  |   ||     | ||||| |||||||||||||||||||||| ||||||||||||||||||||||||
----gtatgtcacgcgtgtgcct-ccctgcttgttattccgtctagctaagctctctcagcttcacttcagttagttaccttggtgcacatgcagGCGCTGCCGCGGCGGCAACGGGTGCATGGTCGGCGACGACAACGGCAGCCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttttgcctcaaactctcatctcatctcttctccctatatatatgtcgtcgaagGCGGTGCCGCGGCGGCAACGGGTGCAAGGTCGGCGACGACAACGGCAGCCT
                                    tatatatatgt  TA-rich tract