Sequence
atgc intronic sequence ATGC exonic sequencegttagtatctaccattactaatctgcacgatgaatcaatgaaatcagatccagatgccaattcagggcgatgcgaatcataattttaaattttttgacactgttcttgatttggttggggtttcttgaagGCCGGGAAAGCAAGAAAGCAGATCAACGAGTGGACGCGGCAGGTGACGAGGGGCCTCATCAACTCTGTCCTGCCGCCGGGATCCATCGGCCTGACGACGG
Basic information
species | Oryza sativa |
transcript | LOC_Os11g18660.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|11173062|gb|AU164594.1|AU164594EST: AGGTACAACCGTACAATGCCGAGGCCATCACCGTCGACTTCGAGAACAAG GCCGGGAAAGCAAGAAAGCAGATCAACGAGTGGACGCGGCAGGTGACGAGG
genomic: AGGTACAACCGTACAATGCCGAGGCCATCACCGTCGACTTCGAGAACAAGgttagtatct ... tttcttgaagGCCGGGAAAGCAAGAAAGCAGATCAACGAGTGGACGCGGCAGGTGACGAGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atcataattttaaattttttgacactgttcttgatttggttggggtttcttgaagGCCGGGAAAGCAAGAAAGCAGATCAACGAGTGGACGCGGCAGGTGACGAGGGGCCTCATCAACTCTGTCCTGCCGCCGGGATCCATCGGCCTGACGACGG
tttctt CT-rich tract
aattttaaattttttg TA-rich tract