1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tttttccctgatatattggatgctttcctatagtggaggtaaaattacatttgacaaataatcctgctcaggctgattcgttgtgttcctgttgatgcagTAACTGTCTGAAATGGACTTCTTTACCGAGTATGGTGAGGGGAACAGGTATAAGATAGAAGAGGTCATAGGAAAAGGGAGTTACGGTGTAGTATGCTCCG
species | Oryza sativa |
transcript | LOC_Os11g17080.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCGCGCCGATCTCCATCTCGCGAGCACAGCAGCCGCGCCGTCGTCCTCGT TAACTGTCTGAAATGGACTTCTTTACCGAGTATGGTGAGGGGAACAGGTATEST: gi|88398107|gb|CI585610.1|CI585610
genomic: CCGCGCCGATCTCCATCTCGCGAGCACAGCAGCCGCGCCGTCGTCCTCGTgtgagcgtcc ... gttgatgcagTAACTGTCTGAAATGGACTTCTTTACCGAGTATGGTGAGGGGAACAGGTAT
EST: CCGCGCCGATCTCCATCTCGCGAGCACAGCAGCCGCGCCGTCGTCCTCGT TAACTGTCTGAAATGGACTTCTTTACCGAGTATGGTGAGGGGAACAGGTATEST: gi|88342187|gb|CI658842.1|CI658842
genomic: CCGCGCCGATCTCCATCTCGCGAGCACAGCAGCCGCGCCGTCGTCCTCGTgtgagcgtcc ... gttgatgcagTAACTGTCTGAAATGGACTTCTTTACCGAGTATGGTGAGGGGAACAGGTAT
EST: CCGCGCCGATCTCCATCTCGCGAGCACAGCAGCCGCGCCGTCGTCCTCGT TAACTGTCTGAAATGGACTTCTTTACCGAGTATGGTGAGGGGAACAGGTAT
genomic: CCGCGCCGATCTCCATCTCGCGAGCACAGCAGCCGCGCCGTCGTCCTCGTgtgagcgtcc ... gttgatgcagTAACTGTCTGAAATGGACTTCTTTACCGAGTATGGTGAGGGGAACAGGTAT
tacatttgacaaataatcctgctcaggctgattcgttgtgttcctgttgatgcagTAACTGTCTGAAATGGACTTCTTTACCGAGTATGGTGAGGGGAACAGGTATAAGATAGAAGAGGTCATAGGAAAAGGGAGTTACGGTGTAGTATGCTCCG
tgttgat putative branch site (score: 4)
ttcctgtt CT-rich tract
acaaataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttttccctgatatattggatgctttcctatagtggaggtaaaattacatttgacaaataatcctgctcaggctgattcgttgtgttcctgttgatgcagTAACTGTCTGAAATGGACTTCTTTACCGAGTATGGTGAGGGGAACAGGTATAAGATAGAAGAGGTCATAGGAAAAGGGAGTTACGGTGTAGTATGCTCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- -ttccctg
- - - - - - - - tggatgc
- - - - - - - - - - - - - - - - - - aggtaaaa
- - - - - - - - - - - - - - - - - - - - - - - acatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - -acaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgtgtt