1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgcatatatggttgtaatttgttctagaacattttgttataaagttcatttcatgattgaattagcctctgagcttaatagtgacattgtaatcttgcagTCTGTTCAGTTAAGCACTGTCAATGCATGGAGACATTCTCAG
species | Oryza sativa |
transcript | LOC_Os11g16290.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGAAGGATAACCTTTGCTTAGAGATGGTCAATGTTTCGAATGCTCTGCAG TCTGTTCAGTTAAGCACTGTCAATGCATGGAGACATTCTCAGEST: gi|29634506|gb|CB639515.1|CB639515
genomic: AGAAGGATAACTTTTGCTTAGAGATGGTCAATGTTTCGAATGCTCTGCAGgttagtactt ... aatcttgcagTCTGTTCAGTTAAGCACTGTCAATGCATGGAGACATTCTCAG
EST: AAAAGGATAACTTTTGCTTAGAGATGGTCAATGTTTCGAATGCTCTGCAG TCTGTTCAGTTAAGCACTGTCAATGCATGGAGACATTCTCAGEST: gi|86904471|gb|CI308681.1|CI308681
genomic: AGAAGGATAACTTTTGCTTAGAGATGGTCAATGTTTCGAATGCTCTGCAGgttagtactt ... aatcttgcagTCTGTTCAGTTAAGCACTGTCAATGCATGGAGACATTCTCAG
EST: AGAAGGATAACTTTTGCTTAGAGATGGTCAATGTTTCGAATGCTCTGCAG TCTGTTCAGTTAAGCACTGTCAATGCATGGAGACATTCTCAG
genomic: AGAAGGATAACTTTTGCTTAGAGATGGTCAATGTTTCGAATGCTCTGCAGgttagtactt ... aatcttgcagTCTGTTCAGTTAAGCACTGTCAATGCATGGAGACATTCTCAG
tcatttcatgattgaattagcctctgagcttaatagtgacattgtaatcttgcagTCTGTTCAGTTAAGCACTGTCAATGCATGGAGACATTCTCAG
gcttaat putative branch site (score: 5)
attgaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcatatatggttgtaatttgttctagaacattttgttataaagttcatttcatgattgaattagcctctgagcttaatagtgacattgtaatcttgcagTCTGTTCAGTTAAGCACTGTCAATGCATGGAGACATTCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA