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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggcgacgaccatcccgttgtccatcggttcctccagcaccgatctatactttccttttctcctgttcgtcttcctttctcccatctgattaatcgtgaattcctctgtgcagCAATACTCAGGAAATTAGGAATGCGTCGATGGTGGTTGTTTGATTTCTCAAGAATGGGGCCATCGACCATGGCATCCAAAGCAGAGTCTTGCAAGTGTGG

Basic information

species Oryza sativa
transcript LOC_Os11g14730.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|569426|gb|D40275.1|D40275
EST:     GACGCAGATCGGGAGGTGGCCATTGATGGGGATCGACAGCGGCGATGGCG                         CAATACTCAGGAAATTAGGAATGCGTCGATGGTGGTTGTTTGATTTCTCAA
genomic: GACGCAGATCGGGAGGTGGCCATTGATGGGGATCGACAGCGGCGATGGCGgtaggcgacg ... ctctgtgcagCAATACTCAGGAAATTAGGAATGCGTCGATGGTGGTTGTTTGATTTCTCAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctcctgttcgtcttcctttctcccatctgattaatcgtgaattcctctgtgcagCAATACTCAGGAAATTAGGAATGCGTCGATGGTGGTTGTTTGATTTCTCAAGAATGGGGCCATCGACCATGGCATCCAAAGCAGAGTCTTGCAAGTGTGG
                             gattaat  putative branch site (score: 3)
                                          ttcctctgt  putative PPT
                            tgattaat  TA-rich tract