1 5' 3' | 2 5' 3' | 3 5' 3' |
...gcgtgtgggggtggtgctgttctaatcggagtttgttggcgaaccaaaaatgatttctcccttttttttttcttcttttaattttttttggggggttcagGATGCCCCACGTTAGGTCCGCCGCCGTGAAGCTGATGGAGGAGCAGCTGGATTCATCGGAGATGGACATGGACGAGCCCGGCGGCGCCGCGGCGGCGGCG
species | Oryza sativa |
transcript | LOC_Os11g14180.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
aaaaatgatttctcccttttttttttcttcttttaattttttttggggggttcagGATGCCCCACGTTAGGTCCGCCGCCGTGAAGCTGATGGAGGAGCAGCTGGATTCATCGGAGATGGACATGGACGAGCCCGGCGGCGCCGCGGCGGCGGCG
ttttaat putative branch site (score: 27)
tttctccctttttttt CT-rich tract
ttttttttttcttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcgtgtgggggtggtgctgttctaatcggagtttgttggcgaaccaaaaatgatttctcccttttttttttcttcttttaattttttttggggggttcagGATGCCCCACGTTAGGTCCGCCGCCGTGAAGCTGATGGAGGAGCAGCTGGATTCATCGGAGATGGACATGGACGAGCCCGGCGGCGCCGCGGCGGCGGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
gcgtgtg
- - - - - - - tgctgtt
- - - - - - - - - - - - - - - - -tgttggc
- - - - - - - - - - - - - - - - - - - - gaaccaa