1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gtagtttggtagctttaatgcttatgataggttatttttactttgcatatgtcttttagttgtttcaggctttgacaatattgggtatgatttattgcagACTGAAGAACAACATTTCTTTACTTGGACAGTGCTTCCTTTTGATTATCACTATTTCTCTTGCTCCTAAGTTATGGCAACTATGGTTGAGGGGTGTGTTG
species | Oryza sativa |
transcript | LOC_Os11g13990.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCGGCGGAGACGGCCACTGCGACGCCGCTCTCCTCCTCCACTTCCTCGAG ACTGAAGAACAACATTTCTTTACTTGGACAGTGCTTCCTTTTGATTATCACEST: gi|88340640|gb|CI647444.1|CI647444
genomic: GCGGCGGAGACGGCCACTGCGACGCCGCTCTCCTCCTCCACTTCCTCGAGgttagtagtc ... tttattgcagACTGAAGAACAACATTTCTTTACTTGGACAGTGCTTCCTTTTGATTATCAC
EST: GCGGCGGAGACGGCCACTGCGACGCCGCTCTCCTCCTCCACTTCCTCGAG ACTGAAGAACAACATTTCTTTACTTGGACAGTGCTTCCTTTTGATTATCACEST: gi|88328216|gb|CI651222.1|CI651222
genomic: GCGGCGGAGACGGCCACTGCGACGCCGCTCTCCTCCTCCACTTCCTCGAGgttagtagtc ... tttattgcagACTGAAGAACAACATTTCTTTACTTGGACAGTGCTTCCTTTTGATTATCAC
EST: GCGGCGGAGACGGCCACTGCGACGCCGCTCTCCTCCTCCACTTCCTCGAG ACTGAAGAACAACATTTCTTTACTTGGACAGTGCTTCCTTTTGATTATCACEST: gi|88349978|gb|CI634513.1|CI634513
genomic: GCGGCGGAGACGGCCACTGCGACGCCGCTCTCCTCCTCCACTTCCTCGAGgttagtagtc ... tttattgcagACTGAAGAACAACATTTCTTTACTTGGACAGTGCTTCCTTTTGATTATCAC
EST: GCGGCGGAGACGGCCACTGCGACGCCGCTCTCCTCCTCCACTTCCTCGAG ACTGAAGAACAACATTTCTTTACTTGGACAGTGCTTCCTTTTGATTATCAC
genomic: GCGGCGGAGACGGCCACTGCGACGCCGCTCTCCTCCTCCACTTCCTCGAGgttagtagtc ... tttattgcagACTGAAGAACAACATTTCTTTACTTGGACAGTGCTTCCTTTTGATTATCAC
catatgtcttttagttgtttcaggctttgacaatattgggtatgatttattgcagACTGAAGAACAACATTTCTTTACTTGGACAGTGCTTCCTTTTGATTATCACTATTTCTCTTGCTCCTAAGTTATGGCAACTATGGTTGAGGGGTGTGTTG
ctttgac putative branch site (score: 3)
tatgatttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagtttggtagctttaatgcttatgataggttatttttactttgcatatgtcttttagttgtttcaggctttgacaatattgggtatgatttattgcagACTGAAGAACAACATTTCTTTACTTGGACAGTGCTTCCTTTTGATTATCACTATTTCTCTTGCTCCTAAGTTATGGCAACTATGGTTGAGGGGTGTGTTG
- - - - - - - - aatgctt
- - - - - - - - - - - - - - - - - - - - ctttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttca