1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gttcgtttaattagttagttactctcttaatccattatttcttgggtagaaatatgttgcttgatctgatttgttcttgtttgtgtttgtgttttgttggatatcgtttgcattgatgatgattgcagGGATCCAGGCGTTCGAGATGATGGCGATCGCGGCGGTGGGGAACAACCTGATCACCTACGTCTTCAACGAGATGCACTACCCGCTGTCAAAGTCGGCCAA
species | Oryza sativa |
transcript | LOC_Os11g12740.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTGCGGCTCTCGCAAGCATGGCGGCATGAAAGCGGCCGTCTTTGTGCTAG GGATCCAGGCGTTCGAGATGATGGCGATCGCGGCGGTGGGGAACAACCTGAEST: gi|58664898|gb|CK053584.1|CK053584
genomic: TTGCGGCTCTCGCAAGCATGGCGGCATGAAAGCGGCCGTCTTTGTGCTAGgttcgtttaa ... atgattgcagGGATCCAGGCGTTCGAGATGATGGCGATCGCGGCGGTGGGGAACAACCTGA
EST: TTGCGGCTCTCGCAAGCATGGCGGCATGAAAGCGGACGTCTTTGTGCTAG GGATCCAGGCGTTCGAGATGATGGCGATCGCGEST: gi|88589343|gb|CI707211.1|CI707211
genomic: TTGCGGCTCTCGCAAGCATGGCGGCATGAAAGCGGCCGTCTTTGTGCTAGgttcgtttaa ... atgattgcagGGATCCAGGCGTTCGAGATGATGGCGATCGCG
EST: TTGCGGCTCTCGCAAGCATGGCGGCATGAAAGCGGCCGTCTTTGTGCTAG GGATCCAGGCGTTCGAGATGATGGCGATCGCGGCGGTGGGGAACAACCTGAEST: gi|88328475|gb|CI676683.1|CI676683
genomic: TTGCGGCTCTCGCAAGCATGGCGGCATGAAAGCGGCCGTCTTTGTGCTAGgttcgtttaa ... atgattgcagGGATCCAGGCGTTCGAGATGATGGCGATCGCGGCGGTGGGGAACAACCTGA
EST: TTGCGGCTCTCGCAAGCATGGCGGCATGAAAGCGGCCGTCTTTGTGCTAG GGATCCAGGCGTTCGAGATGATGGCGATCGCGGCGGTGGGGAACAACCTGAEST: gi|58652598|gb|CK041278.1|CK041278
genomic: TTGCGGCTCTCGCAAGCATGGCGGCATGAAAGCGGCCGTCTTTGTGCTAGgttcgtttaa ... atgattgcagGGATCCAGGCGTTCGAGATGATGGCGATCGCGGCGGTGGGGAACAACCTGA
EST: TTGCGGCTCTCGCAAGCATGGCGGCATGAAAGCGGCCGTCTTTGTGCTAG GGATCCAGGCGTTCGAGATGATGGCGATCGCGGCGGTGGGGAACAACCTGAEST: gi|88903824|gb|CI711526.1|CI711526
genomic: TTGCGGCTCTCGCAAGCATGGCGGCATGAAAGCGGCCGTCTTTGTGCTAGgttcgtttaa ... atgattgcagGGATCCAGGCGTTCGAGATGATGGCGATCGCGGCGGTGGGGAACAACCTGA
EST: TTGCGGCTCTCGCAAGCATGGCGGCATGAAAGCGGCCGTCTTTGTGCTAG GGATCCAGGCGTTCGAGATGATGGCGATCGCGGCGGTGGGGAACAACCTGAEST: gi|58655026|gb|CK043706.1|CK043706
genomic: TTGCGGCTCTCGCAAGCATGGCGGCATGAAAGCGGCCGTCTTTGTGCTAGgttcgtttaa ... atgattgcagGGATCCAGGCGTTCGAGATGATGGCGATCGCGGCGGTGGGGAACAACCTGA
EST: TTGCGGCTCTCGCAAGCATGGCGGCATGAAAGCGGCCGTCTTTGTGCTAG GGATCCAGGCGTTCGAGATGATGGCGATCGCGGCGGTGGGGAACAACCTGAEST: gi|88404067|gb|CI601477.1|CI601477
genomic: TTGCGGCTCTCGCAAGCATGGCGGCATGAAAGCGGCCGTCTTTGTGCTAGgttcgtttaa ... atgattgcagGGATCCAGGCGTTCGAGATGATGGCGATCGCGGCGGTGGGGAACAACCTGA
EST: TTGCGGCTCTCGCAAGCATGGCGGCATGAAAGCGGCCGTCTTTGTGCTAG GGATCCAGGCGTTCGAGATGATGGCGATCGCGGCGGTGGGGAACAACCTGAEST: gi|58670336|gb|CK059022.1|CK059022
genomic: TTGCGGCTCTCGCAAGCATGGCGGCATGAAAGCGGCCGTCTTTGTGCTAGgttcgtttaa ... atgattgcagGGATCCAGGCGTTCGAGATGATGGCGATCGCGGCGGTGGGGAACAACCTGA
EST: TTGCGGCTCTCGCAAGCATGGCGGCATGAAAGCGGCCGTCTTTGTGCTAG GGATCCAGGCGTTCGAGATGATGGCGATCGCGGCGGTGGGGAACAACCTGA
genomic: TTGCGGCTCTCGCAAGCATGGCGGCATGAAAGCGGCCGTCTTTGTGCTAGgttcgtttaa ... atgattgcagGGATCCAGGCGTTCGAGATGATGGCGATCGCGGCGGTGGGGAACAACCTGA
ttcttgtttgtgtttgtgttttgttggatatcgtttgcattgatgatgattgcagGGATCCAGGCGTTCGAGATGATGGCGATCGCGGCGGTGGGGAACAACCTGATCACCTACGTCTTCAACGAGATGCACTACCCGCTGTCAAAGTCGGCCAA
cattgat putative branch site (score: 6)
ttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgtttaattagttagttactctcttaatccattatttcttgggtagaaatatgttgcttgatctgatttgttcttgtttgtgtttgtgttttgttggatatcgtttgcattgatgatgattgcagGGATCCAGGCGTTCGAGATGATGGCGATCGCGGCGGTGGGGAACAACCTGATCACCTACGTCTTCAACGAGATGCACTACCCGCTGTCAAAGTCGGCCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG