1 5' 3' | 2 5' 3' | 3 5' 3' |
gtacatatacataaaaatattacaataaattataattttttcaattgtgatatatattttgttagaattttaattaagtttaattaattttctattataatatttttggttaattagGGGTGTGATGGGTCGGTGCTGATCAAGGGAGTGGGGAATAACGCGGAGGTGAACAACAACAAGCACCAGGGGCTGCGTGGGCTTGACGTGGTGGACAGCA
species | Oryza sativa |
transcript | LOC_Os11g10460.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCATCCTCCCCGCCCTTGTTCGTCTCCAGTTCCACGACTGCTTCGCCAAG GGGTGTGATGGGTCGGTGCTGATCAAGGGAGTGGGGAATAACGCGGAGGTGEST: gi|88693106|gb|CI736681.1|CI736681
genomic: CCATCCTCCCCGCCCTTGTTCGTCTCCAGTTCCACGACTGCTTCGCCAAGgtacatatac ... ggttaattagGGGTGTGATGGGTCGGTGCTGATCAAGGGAGTGGGGAATAACGCGGAGGTG
EST: CCATCCTCCCCGCCCTTGTTCGTCTCCAGTTCCACGACTGCTTCGCCAAG GGGTGTGATGGGTCGGTGCTGATCAAGGGAGTGGGGAAEST: gi|88346392|gb|CI635870.1|CI635870
genomic: CCATCCTCCCCGCCCTTGTTCGTCTCCAGTTCCACGACTGCTTCGCCAAGgtacatatac ... ggttaattagGGGTGTGATGGGTCGGTGCTGATCAAGGGAGTGGGGAA
EST: CCATCCTCCCCGCCCTTGTTCGTATCCAGTTCCACGACTGCTTCGCCAAG GGGTGTGATGGGTCGGTGCTGATCAAGGGAGTGGGGAATAACGCGGAGGTGEST: gi|88328101|gb|CI649903.1|CI649903
genomic: CCATCCTCCCCGCCCTTGTTCGTCTCCAGTTCCACGACTGCTTCGCCAAGgtacatatac ... ggttaattagGGGTGTGATGGGTCGGTGCTGATCAAGGGAGTGGGGAATAACGCGGAGGTG
EST: CCATCCTCCCCGCCCTTGTTCGTCTCCAGTTCCACGACTGCTTCGCCAAG GGGTGTGATGGGTCGGTGCTGATCAAGGGAGTGGGGAATAACGCGGAGGTGEST: gi|88346377|gb|CI635855.1|CI635855
genomic: CCATCCTCCCCGCCCTTGTTCGTCTCCAGTTCCACGACTGCTTCGCCAAGgtacatatac ... ggttaattagGGGTGTGATGGGTCGGTGCTGATCAAGGGAGTGGGGAATAACGCGGAGGTG
EST: CATCCTCCCCGCCCTTGCTTCGTCTCCAGTTCCACGACTGCTTCGCCAAG GGGTGTGATGGGTCGGTGCTGATCAAGGGAGTGGGGAATAACGCGGAGGTGEST: gi|88692557|gb|CI736132.1|CI736132
genomic: CATCCTCCCCGCCCTTG-TTCGTCTCCAGTTCCACGACTGCTTCGCCAAGgtacatatac ... ggttaattagGGGTGTGATGGGTCGGTGCTGATCAAGGGAGTGGGGAATAACGCGGAGGTG
EST: CCATCCTCCCCGCCCTTGTTCGTCTCCAGTTCCACGACTGCTTCGCCAAG GGGTGTGATGGGTCGGTGCTGATCAAGGGAGTGGGGAATAACGCGGAGGTGEST: gi|88346378|gb|CI635856.1|CI635856
genomic: CCATCCTCCCCGCCCTTGTTCGTCTCCAGTTCCACGACTGCTTCGCCAAGgtacatatac ... ggttaattagGGGTGTGATGGGTCGGTGCTGATCAAGGGAGTGGGGAATAACGCGGAGGTG
EST: CCATCCTCCCCGCCCTTGTTCGTCTCCAGTTCCACGACTGCTTCGCCAAG GGGTGTGATGGGTCGGTGCTGATCAAGGGAGTGGGGAATAACGCGGAGGTG
genomic: CCATCCTCCCCGCCCTTGTTCGTCTCCAGTTCCACGACTGCTTCGCCAAGgtacatatac ... ggttaattagGGGTGTGATGGGTCGGTGCTGATCAAGGGAGTGGGGAATAACGCGGAGGTG
tagaattttaattaagtttaattaattttctattataatatttttggttaattagGGGTGTGATGGGTCGGTGCTGATCAAGGGAGTGGGGAATAACGCGGAGGTGAACAACAACAAGCACCAGGGGCTGCGTGGGCTTGACGTGGTGGACAGCA
aattaat putative branch site (score: 14)
ttttaattaagtttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacatatacataaaaatattacaataaattataattttttcaattgtgatatatattttgttagaattttaattaagtttaattaattttctattataatatttttggttaattagGGGTGTGATGGGTCGGTGCTGATCAAGGGAGTGGGGAATAACGCGGAGGTGAACAACAACAAGCACCAGGGGCTGCGTGGGCTTGACGTGGTGGACAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA