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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgcttgcacttccatctttagttcgtttatattatatcatttctataaccgtgcttatatccactcaaactgtgaggatttgtttatcttcttatttgtattctgtacagTTTATTTTCAGAAGGGATTTGAAATGGTGCCCAACATTTACGAAGTTAAAGACTTTGTTACTCAATGAATATTGGTGTGTGCCTGATGATTATAGTGCAC

Basic information

species Oryza sativa
transcript LOC_Os11g09970.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58597714|gb|CK008242.1|CK008242
EST:     AAGGTTTATCGAACGCTAAGACGTTGGTTCTGATAAATAAACAAAAATCG                         TTTATTTTCAGAAGGGATTTGAAATGGTGCCCAACATTTACGAAGTTAAAG
genomic: AAGGTTTATCGAACGCTAAGACGTTGGTTCTGATAAATAAACAAAAATCAgtacgcttgc ... ttctgtacagTTTATTTTCAGAAGGGATTTGAAATGGTGCCCAACATTTACGAAGTTAAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatatccactcaaactgtgaggatttgtttatcttcttatttgtattctgtacagTTTATTTTCAGAAGGGATTTGAAATGGTGCCCAACATTTACGAAGTTAAAGACTTTGTTACTCAATGAATATTGGTGTGTGCCTGATGATTATAGTGCAC
                           tttatcttcttattt  TA-rich tract