1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgaggggctcgggttcttgcggggtggaagatgtgtttttggggggcggattcgggttgggggcgttggggaggtgcggaaaggtgggaatttgggggctgatttgggtggtttgtttttgttgttgtttgcagGATTTAGGGTTTTTGGTGGTGAGAGGGGGAAAATGGCGACGGCCGTGGCGTGCGCGGAGAGGGCGACGAGCGACATGCTGATCGGGCCGGATTGGGCGGT
species | Oryza sativa |
transcript | LOC_Os11g09329.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCTTGGTGCTTCTTGGCGCCGAATCTCGGGGAGGAGGTCGCTCAGATTCG GATTTAGGGTTTTTGGTGGTGAGA-GGGGAAAATGGCGACGGCCGTGGCGTEST: gi|33654658|gb|CF277272.1|CF277272
genomic: CCTTGGTGCTTCTTGGCGCCGAATCTTGGGGAGGAGGTCGCTCAGATTCGgtgaggggct ... ttgtttgcagGATTTAGGGTTTTTGGTGGTGAGAGGGGGAAAATGGCGACGGCCGTGGCGT
EST: CCTTGGTGCTTCTTGGCGCCGAATCTTGGGGAGGAGGTCGCTCAGATTCG GATTTAGGGTTTTTGGTGGTGAGAGGGGGAAAATGGCGACGGCCGTGGCGTEST: gi|88433331|gb|CI591771.1|CI591771
genomic: CCTTGGTGCTTCTTGGCGCCGAATCTTGGGGAGGAGGTCGCTCAGATTCGgtgaggggct ... ttgtttgcagGATTTAGGGTTTTTGGTGGTGAGAGGGGGAAAATGGCGACGGCCGTGGCGT
EST: CCTTGGTGCTTCTTGGCGCCGAATCTTGGGGAGGAGGTCGCTCAGATTCG GATTTAGGGTTTTTGGTGGTGAGAGGGGGAAAATGGCGACGGCCGTGGCGTEST: gi|58660357|gb|CK049037.1|CK049037
genomic: CCTTGGTGCTTCTTGGCGCCGAATCTTGGGGAGGAGGTCGCTCAGATTCGgtgaggggct ... ttgtttgcagGATTTAGGGTTTTTGGTGGTGAGAGGGGGAAAATGGCGACGGCCGTGGCGT
EST: CCTTGGTGCTTCTTGGCGCCGAATCTCGGAGAGGAGGTCGCTCAGATTCG GATTTAGGGTTTTTGGTGGTGAGA-GGGGAAAATGGCGACGGCCGTGGCGTEST: gi|88311167|gb|CI570241.1|CI570241
genomic: CCTTGGTGCTTCTTGGCGCCGAATCTTGGGGAGGAGGTCGCTCAGATTCGgtgaggggct ... ttgtttgcagGATTTAGGGTTTTTGGTGGTGAGAGGGGGAAAATGGCGACGGCCGTGGCGT
EST: GCTTGGTGCTTCTTGGCGCCGAATCTTGGGGAGGAGGTCGCTCAGATTCG GATTTAGGGTTTTTGGTGGTGAGAGGGGGAAAATGGCGACGGCCGTGGCGT
genomic: CCTTGGTGCTTCTTGGCGCCGAATCTTGGGGAGGAGGTCGCTCAGATTCGgtgaggggct ... ttgtttgcagGATTTAGGGTTTTTGGTGGTGAGAGGGGGAAAATGGCGACGGCCGTGGCGT
aaaggtgggaatttgggggctgatttgggtggtttgtttttgttgttgtttgcagGATTTAGGGTTTTTGGTGGTGAGAGGGGGAAAATGGCGACGGCCGTGGCGTGCGCGGAGAGGGCGACGAGCGACATGCTGATCGGGCCGGATTGGGCGGT
ggctgat putative branch site (score: 20)
tttgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaggggctcgggttcttgcggggtggaagatgtgtttttggggggcggattcgggttgggggcgttggggaggtgcggaaaggtgggaatttgggggctgatttgggtggtttgtttttgttgttgtttgcagGATTTAGGGTTTTTGGTGGTGAGAGGGGGAAAATGGCGACGGCCGTGGCGTGCGCGGAGAGGGCGACGAGCGACATGCTGATCGGGCCGGATTGGGCGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT