1 5' 3' | 2 5' 3' | 3 5' 3' |
...gaccatatttccaacaatccaaaaacctgataggtcattttcggtagttggctttgctgctgcactgaaaccacatgcttttgatggttctaactataagAGATGGAAAGCACATGCACTATTGTGGTTGACAGCGATGCAATGCTTCTTTGTTTCACGGGGCAAACGAAGTGAACCACCTCTCTCTCCTGAGGAAGAGG
species | Oryza sativa |
transcript | LOC_Os11g08510.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
agttggctttgctgctgcactgaaaccacatgcttttgatggttctaactataagAGATGGAAAGCACATGCACTATTGTGGTTGACAGCGATGCAATGCTTCTTTGTTTCACGGGGCAAACGAAGTGAACCACCTCTCTCTCCTGAGGAAGAGG
ttctaac putative branch site (score: 1)
taactataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaccatatttccaacaatccaaaaacctgataggtcattttcggtagttggctttgctgctgcactgaaaccacatgcttttgatggttctaactataagAGATGGAAAGCACATGCACTATTGTGGTTGACAGCGATGCAATGCTTCTTTGTTTCACGGGGCAAACGAAGTGAACCACCTCTCTCTCCTGAGGAAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - -caacaat
- - - - - - - - - -caaaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgatgg