1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gccatttctaaaaactaagcctactgatttgtaatcacactgagaacaacttttgtatgttagtaatcacttcatctacctgttatttaattttatgcagTACAAAGCTGAAGAAACGGTTAAACTCTGGGTAAACAAGGTTGGCCCGTACAATAACCCGCAAGAAACTTACAACTATTACAGCCTCCCATTTTGTCAGC
species | Oryza sativa |
transcript | LOC_Os11g07910.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCACCGTCGCGGGGCTGCCCCTCGCTTCCGCCTCCGAGTCCGACCACAAG TACAAAGCTGAAGAAACGGTTAAACTCTGGGTAAACAAGGTTGGCCCGTACEST: gi|29630127|gb|CB635136.1|CB635136
genomic: TCACCGTCGCGGGGCTGCCCCTCGCTTCCGCCTCCGAGTCCGACCACAAGgtgcgttgtc ... ttttatgcagTACAAAGCTGAAGAAACGGTTAAACTCTGGGTAAACAAGGTTGGCCCGTAC
EST: TCACCGTCGCGGGGCTGCCCCTCGCTTCCGCCTCCGAGTCCGACCACGAG TACAAAGCTGAAGAAACAGTTAAACTCTGGGTAGACAAGGTTGGCCCGGACEST: gi|88422337|gb|CI689147.1|CI689147
genomic: TCACCGTCGCGGGGCTGCCCCTCGCTTCCGCCTCCGAGTCCGACCACAAGgtgcgttgtc ... ttttatgcagTACAAAGCTGAAGAAACGGTTAAACTCTGGGTAAACAAGGTTGGCCCGTAC
EST: CACCGTCGCGGGGCTNGCCC-TCGNTTCCGCCTCCGAGTCCGANCACAAG TACAAAGCTGAAGAAANGGTTAAACTCTGGGTAAACAAGGTTGGCCCGTACEST: gi|88733806|gb|CI756983.1|CI756983
genomic: CACCGTCGCGGGGCT-GCCCCTCGCTTCCGCCTCCGAGTCCGACCACAAGgtgcgttgtc ... ttttatgcagTACAAAGCTGAAGAAACGGTTAAACTCTGGGTAAACAAGGTTGGCCCGTAC
EST: TCACCGTCGCGGGGCTGCCCCTCGCTTCCGCCTCCGAGTCCGACCACAAG TACAAAGCTGAAGAAACGGTTAAACTCTGGGTAAACAAGGTTGGCCCGTACEST: gi|88591655|gb|CI709704.1|CI709704
genomic: TCACCGTCGCGGGGCTGCCCCTCGCTTCCGCCTCCGAGTCCGACCACAAGgtgcgttgtc ... ttttatgcagTACAAAGCTGAAGAAACGGTTAAACTCTGGGTAAACAAGGTTGGCCCGTAC
EST: TCACCGTCGCGGGGCTGCCCCTCGCTTCCGCCTCCGAGTCCGACCACAAG TACAAAGCTGAAGAAACGGTTAAACTCTGGGTAAACAAGGTTGGCCCGTACEST: gi|88729589|gb|CI751392.1|CI751392
genomic: TCACCGTCGCGGGGCTGCCCCTCGCTTCCGCCTCCGAGTCCGACCACAAGgtgcgttgtc ... ttttatgcagTACAAAGCTGAAGAAACGGTTAAACTCTGGGTAAACAAGGTTGGCCCGTAC
EST: TCACCGTCGCGGGGCTGCCCCTCGCTTCCGCCTCCGAGTCCGACCACAAG TACAAAGCTGAAGAAACGGTTAAACTCTGGGTAAACAAGGTTGGCCCGTACEST: gi|86892079|gb|CI305187.1|CI305187
genomic: TCACCGTCGCGGGGCTGCCCCTCGCTTCCGCCTCCGAGTCCGACCACAAGgtgcgttgtc ... ttttatgcagTACAAAGCTGAAGAAACGGTTAAACTCTGGGTAAACAAGGTTGGCCCGTAC
EST: TCACCGTCGCGGGGCTGCCCCTCGCTTCCGCCTCCGAGTCCGACCACAAG TACAAAGCTGAAGAAACGGTTAAACTCTGGGTAAACAAGGTTGGCCCGTACEST: gi|88393200|gb|CI616684.1|CI616684
genomic: TCACCGTCGCGGGGCTGCCCCTCGCTTCCGCCTCCGAGTCCGACCACAAGgtgcgttgtc ... ttttatgcagTACAAAGCTGAAGAAACGGTTAAACTCTGGGTAAACAAGGTTGGCCCGTAC
EST: TCACCGTCGCGGGGCTGGCCCTCGCTTCCGGCTCCGAGTCCGACCACAAG TACAAAGCTGAAGAAACGGTTAAACCTCTGGGTAAACAAGGTTGGCCCGTAEST: gi|88585282|gb|CI702903.1|CI702903
genomic: TCACCGTCGCGGGGCTGCCCCTCGCTTCCGCCTCCGAGTCCGACCACAAGgtgcgttgtc ... ttttatgcagTACAAAGCTGAAGAAACGGTTAAAC-TCTGGGTAAACAAGGTTGGCCCGTA
EST: TCACCGTCGCGGGGCTGCCCCTCGCTTCCGCCTCCGAGTCCGACCACAAG TACAAAGCTGAAGAAACGGTTAAACTCTGGGTAAACAAGGTTGGCCCGTACEST: gi|88432740|gb|CI690584.1|CI690584
genomic: TCACCGTCGCGGGGCTGCCCCTCGCTTCCGCCTCCGAGTCCGACCACAAGgtgcgttgtc ... ttttatgcagTACAAAGCTGAAGAAACGGTTAAACTCTGGGTAAACAAGGTTGGCCCGTAC
EST: TCACCGTCGCGGGGCTGCCCCTCGCTTCCGCCTCCGAGTCCGACCACAAG TACAAAGCTGAAGAAACGGTTAAACTCTGGGTAAACAAGGTTGGCCCGTACEST: gi|88762940|gb|CI772496.1|CI772496
genomic: TCACCGTCGCGGGGCTGCCCCTCGCTTCCGCCTCCGAGTCCGACCACAAGgtgcgttgtc ... ttttatgcagTACAAAGCTGAAGAAACGGTTAAACTCTGGGTAAACAAGGTTGGCCCGTAC
EST: TCACCGTCGCGGGGCTGCCCCTCGCTTCCGCCTCCGAGTCCGACCACAAG TACAAAGCTGAAGAAACGGTTAAACTCTGGGTAAACAAGGTTGGCCCGTACEST: gi|88587417|gb|CI705162.1|CI705162
genomic: TCACCGTCGCGGGGCTGCCCCTCGCTTCCGCCTCCGAGTCCGACCACAAGgtgcgttgtc ... ttttatgcagTACAAAGCTGAAGAAACGGTTAAACTCTGGGTAAACAAGGTTGGCCCGTAC
EST: TCACCGTCGCGGGGCTGCCCCTCGCTTCCGCCTCCGAGTCCGACCACAAG TACAAAGCTGAAGAAACGGTTAAACTCTGGGTAAACAAGGTTGGCCCGTACEST: gi|58667768|gb|CK056454.1|CK056454
genomic: TCACCGTCGCGGGGCTGCCCCTCGCTTCCGCCTCCGAGTCCGACCACAAGgtgcgttgtc ... ttttatgcagTACAAAGCTGAAGAAACGGTTAAACTCTGGGTAAACAAGGTTGGCCCGTAC
EST: TCACCGTCGCGGGGCTGCCCCTCGCTTCCGCCTCCGAGTCCGACCACAAG TACAAAGCTGAAGAAACAGTTAAACTCTGGGTAAACAAGGTTGGCCCGTACEST: gi|87014296|gb|CI305074.1|CI305074
genomic: TCACCGTCGCGGGGCTGCCCCTCGCTTCCGCCTCCGAGTCCGACCACAAGgtgcgttgtc ... ttttatgcagTACAAAGCTGAAGAAACGGTTAAACTCTGGGTAAACAAGGTTGGCCCGTAC
EST: TCACCGTCGCGGGGCTGCCCCTCGCTTCCGCCTCCGAGTCCGACCACAAG TACAAAGCTGAAGAAACGGTTAAACTCTGGGTAAACAAGGTTGGCCCGTACEST: gi|88336758|gb|CI644007.1|CI644007
genomic: TCACCGTCGCGGGGCTGCCCCTCGCTTCCGCCTCCGAGTCCGACCACAAGgtgcgttgtc ... ttttatgcagTACAAAGCTGAAGAAACGGTTAAACTCTGGGTAAACAAGGTTGGCCCGTAC
EST: TCACCGTCGCGGGGCTGCCCCTCGCTTCCGCCTCCGAGTCCGACCANAAG TACAAAGCTGAAGAAACGGTTAAACTCTGGGTAAACAAGGTTGGCCCGTACEST: gi|86900951|gb|CI304156.1|CI304156
genomic: TCACCGTCGCGGGGCTGCCCCTCGCTTCCGCCTCCGAGTCCGACCACAAGgtgcgttgtc ... ttttatgcagTACAAAGCTGAAGAAACGGTTAAACTCTGGGTAAACAAGGTTGGCCCGTAC
EST: TCACCGTCGCGGGGCTGCCCCTCGCTTCCGCCTCCGAGTCCGACCACAAG TACAAAGCTGAAGAAACGGTTAAACTCTGGGTAAACAAGGTTGGCCCGTACEST: gi|29623264|gb|CB628275.1|CB628275
genomic: TCACCGTCGCGGGGCTGCCCCTCGCTTCCGCCTCCGAGTCCGACCACAAGgtgcgttgtc ... ttttatgcagTACAAAGCTGAAGAAACGGTTAAACTCTGGGTAAACAAGGTTGGCCCGTAC
EST: TCACCGTCGCGGGGCTGCCCCTCGCTTCCGCCTCCGAGTCCGACCACAAG TACAAAGCTGAAGAAACAGTTAAACTCTGGGTAAACAAGGTTGGCCCGTACEST: gi|86909162|gb|CI302765.1|CI302765
genomic: TCACCGTCGCGGGGCTGCCCCTCGCTTCCGCCTCCGAGTCCGACCACAAGgtgcgttgtc ... ttttatgcagTACAAAGCTGAAGAAACGGTTAAACTCTGGGTAAACAAGGTTGGCCCGTAC
EST: TCACCGTCGCGGGGCTGCCCCTCGCTTCCGCCTCCGAGTCCGACCACAAG TACAAAGCTGAAGACACGGTTAAACTCTGGGTCAACAAGGTTGGCCCGTACEST: gi|88695117|gb|CI739155.1|CI739155
genomic: TCACCGTCGCGGGGCTGCCCCTCGCTTCCGCCTCCGAGTCCGACCACAAGgtgcgttgtc ... ttttatgcagTACAAAGCTGAAGAAACGGTTAAACTCTGGGTAAACAAGGTTGGCCCGTAC
EST: TCACCGTCGCGGGGCTGCCCCTCGCTTCCGCCTCCGAGTCCGACCACAAG TACAAAGCTGAAGAAACGGTTAAANTCTGGGTAAACAAGGTTGGCCCGTACEST: gi|88588858|gb|CI706700.1|CI706700
genomic: TCACCGTCGCGGGGCTGCCCCTCGCTTCCGCCTCCGAGTCCGACCACAAGgtgcgttgtc ... ttttatgcagTACAAAGCTGAAGAAACGGTTAAACTCTGGGTAAACAAGGTTGGCCCGTAC
EST: TCACCGTCGCGGGGCTGCCCCTCGCTTCCGCCTCCGAGTCCGACCACAAG TACAAAGCTGAAGAAACGGTTAAACTCTGGGTAAACAAGGTTGGCCCGTACEST: gi|88694217|gb|CI738255.1|CI738255
genomic: TCACCGTCGCGGGGCTGCCCCTCGCTTCCGCCTCCGAGTCCGACCACAAGgtgcgttgtc ... ttttatgcagTACAAAGCTGAAGAAACGGTTAAACTCTGGGTAAACAAGGTTGGCCCGTAC
EST: TCACCGTCGCGGGGCTGCCCCTCGCTTCCGCCTCCGAGTCCGACCACAAG TACAAAGCTGAAGAAACGGTTAAACTCTGGGTAAACAAGGTTGGCCCGTACEST: gi|88579966|gb|CI691963.1|CI691963
genomic: TCACCGTCGCGGGGCTGCCCCTCGCTTCCGCCTCCGAGTCCGACCACAAGgtgcgttgtc ... ttttatgcagTACAAAGCTGAAGAAACGGTTAAACTCTGGGTAAACAAGGTTGGCCCGTAC
EST: TCACCGTCGCGGGGCTGCCCCTCGCTTCCGCCTCCGAGTCCGACCACAAG TACAAAGCTGAAGAAACGGTTAAACTCTGGGTAAACAAGGTTGGCCCGTACEST: gi|88339854|gb|CI649111.1|CI649111
genomic: TCACCGTCGCGGGGCTGCCCCTCGCTTCCGCCTCCGAGTCCGACCACAAGgtgcgttgtc ... ttttatgcagTACAAAGCTGAAGAAACGGTTAAACTCTGGGTAAACAAGGTTGGCCCGTAC
EST: TCANCGTCGCGGGGCTGCCCCTCGCTTCCGCCTCCGAGTCCGACCACAAG TACAAAGCTGAAGAAACGGTTAAACTCTGGGTAAACAAGGTTGGCCCGTACEST: gi|88733489|gb|CI756666.1|CI756666
genomic: TCACCGTCGCGGGGCTGCCCCTCGCTTCCGCCTCCGAGTCCGACCACAAGgtgcgttgtc ... ttttatgcagTACAAAGCTGAAGAAACGGTTAAACTCTGGGTAAACAAGGTTGGCCCGTAC
EST: TCACCGTCGCGGGGCTGCCCCTCGCTTCCGCCTCCGAGTCCGACCACAAG TACAAAGCTGAAGAAACGGTTAAACTCTGGGTAAACAAGGTTGGCCCGTACEST: gi|88354303|gb|CI637869.1|CI637869
genomic: TCACCGTCGCGGGGCTGCCCCTCGCTTCCGCCTCCGAGTCCGACCACAAGgtgcgttgtc ... ttttatgcagTACAAAGCTGAAGAAACGGTTAAACTCTGGGTAAACAAGGTTGGCCCGTAC
EST: TCACCGTCGCGGGGCTGCCCCTCGCTTCCGCCTCCGAGTCCGACCACAAG TACAAAGCTGAAGAAACGGTTAAACTCTGGGTAAACAAGGTTGGCCCGTACEST: gi|88337177|gb|CI628263.1|CI628263
genomic: TCACCGTCGCGGGGCTGCCCCTCGCTTCCGCCTCCGAGTCCGACCACAAGgtgcgttgtc ... ttttatgcagTACAAAGCTGAAGAAACGGTTAAACTCTGGGTAAACAAGGTTGGCCCGTAC
EST: TCACCGTCGCGGGGCTGCCCCTCGCTTCCGCCTCCGAGTCCGACCACAAG TAAAAAGCTGAAGAAACGGTTAAACTCTGGGTAAACAAGGTTGGCCCGTACEST: gi|88443541|gb|CI597008.1|CI597008
genomic: TCACCGTCGCGGGGCTGCCCCTCGCTTCCGCCTCCGAGTCCGACCACAAGgtgcgttgtc ... ttttatgcagTACAAAGCTGAAGAAACGGTTAAACTCTGGGTAAACAAGGTTGGCCCGTAC
EST: TCACCGTCGCGGGGCTGCCCCTCGCTTCCGCCTCCGAGTCCGACCACAAG TACAAAGCTGAAGAAACGGTTAAACTCTGGGTAAACAAGGTTGGCCCGTACEST: gi|86831804|gb|CI303244.1|CI303244
genomic: TCACCGTCGCGGGGCTGCCCCTCGCTTCCGCCTCCGAGTCCGACCACAAGgtgcgttgtc ... ttttatgcagTACAAAGCTGAAGAAACGGTTAAACTCTGGGTAAACAAGGTTGGCCCGTAC
EST: TCACCGTCGCGGGGCTGCCCCTCGCTTCCGCCTCCGAGTCCGACCACAAG TACAAAGCTGAAGAAACGGTTAAACTCTGGGTAAACAAGGTTGGCCCGTACEST: gi|88368107|gb|CI574989.1|CI574989
genomic: TCACCGTCGCGGGGCTGCCCCTCGCTTCCGCCTCCGAGTCCGACCACAAGgtgcgttgtc ... ttttatgcagTACAAAGCTGAAGAAACGGTTAAACTCTGGGTAAACAAGGTTGGCCCGTAC
EST: TCACCGTCGCGGGGCTGCCCCTCGCTT-CGCCTCCGAGTCCGACCACAAG TACAAAGCTGAAGAAAGGGTTAAACTCTGGGTAAACAAGGTTGGCCCGTACEST: gi|88306502|gb|CI671253.1|CI671253
genomic: TCACCGTCGCGGGGCTGCCCCTCGCTTCCGCCTCCGAGTCCGACCACAAGgtgcgttgtc ... ttttatgcagTACAAAGCTGAAGAAACGGTTAAACTCTGGGTAAACAAGGTTGGCCCGTAC
EST: TCACCGTCGCGGGGCTGCCCCTCGCTTCCGCCTCCGAGTCCGACCACAAG TACAAAGCTGAAGAAACGGTTAAACTCTGGGTAAACAAGGTTGGCCCGTACEST: gi|88296490|gb|CI669266.1|CI669266
genomic: TCACCGTCGCGGGGCTGCCCCTCGCTTCCGCCTCCGAGTCCGACCACAAGgtgcgttgtc ... ttttatgcagTACAAAGCTGAAGAAACGGTTAAACTCTGGGTAAACAAGGTTGGCCCGTAC
EST: TCACCGTCGCGGGGCTGCCCCTCGCTTCCGCCTCCGAGTCCGACCACAAG TACAAAGCTGAAGAAACGGTTAAACTCTGGGTAAACAAGGTTGGCCCGTACEST: gi|29626345|gb|CB631356.1|CB631356
genomic: TCACCGTCGCGGGGCTGCCCCTCGCTTCCGCCTCCGAGTCCGACCACAAGgtgcgttgtc ... ttttatgcagTACAAAGCTGAAGAAACGGTTAAACTCTGGGTAAACAAGGTTGGCCCGTAC
EST: TCACCGTCGCGGGGCTGCCCCTCGCTTCCGCCTCCGAGTCCGACCACAAG TACAAAGCTGAAGAAACAGTTAAACTCTGGGTAAACAAGGTTGGCCCGTACEST: gi|88329904|gb|CI651581.1|CI651581
genomic: TCACCGTCGCGGGGCTGCCCCTCGCTTCCGCCTCCGAGTCCGACCACAAGgtgcgttgtc ... ttttatgcagTACAAAGCTGAAGAAACGGTTAAACTCTGGGTAAACAAGGTTGGCCCGTAC
EST: TCACCGTCGCGGGGCTGCCCCTCGCTTCCGCCTCCGAGTCCGACCACAAG TACAAAGCTGAAGAAACGGTTAAACTCTGGGTAAACAAGGTTGGCCCGTACEST: gi|88725055|gb|CI748314.1|CI748314
genomic: TCACCGTCGCGGGGCTGCCCCTCGCTTCCGCCTCCGAGTCCGACCACAAGgtgcgttgtc ... ttttatgcagTACAAAGCTGAAGAAACGGTTAAACTCTGGGTAAACAAGGTTGGCCCGTAC
EST: TCACCGTCGCGGGGCTGGCCCTCGCTTCCGCCTCCGAGTCCGACCACAAG TACAAAGCTGAAGAAACGGTTAAACTCTGGGTAAACAAGGTTGGCCCGTACEST: gi|88391960|gb|CI683780.1|CI683780
genomic: TCACCGTCGCGGGGCTGCCCCTCGCTTCCGCCTCCGAGTCCGACCACAAGgtgcgttgtc ... ttttatgcagTACAAAGCTGAAGAAACGGTTAAACTCTGGGTAAACAAGGTTGGCCCGTAC
EST: TCACCGTCGCGGGGCTGCCCCTCGCTTCCGCCTCCGAGTCCGACCACAAG TACAAAGCTGAAGAAACGGTTAAACTCTGGGTAAACAAGGTTGGCCCGTACEST: gi|88398094|gb|CI585597.1|CI585597
genomic: TCACCGTCGCGGGGCTGCCCCTCGCTTCCGCCTCCGAGTCCGACCACAAGgtgcgttgtc ... ttttatgcagTACAAAGCTGAAGAAACGGTTAAACTCTGGGTAAACAAGGTTGGCCCGTAC
EST: TCACCGTCGCGGGGCTGCCCCTCGCTTCCGCCTCCGAGTCCGACCACAAG TACAAAGCTGAAGAAACGGTTAAACTCTGGGTAAACAAGGTTGGCCCGTAC
genomic: TCACCGTCGCGGGGCTGCCCCTCGCTTCCGCCTCCGAGTCCGACCACAAGgtgcgttgtc ... ttttatgcagTACAAAGCTGAAGAAACGGTTAAACTCTGGGTAAACAAGGTTGGCCCGTAC
acaacttttgtatgttagtaatcacttcatctacctgttatttaattttatgcagTACAAAGCTGAAGAAACGGTTAAACTCTGGGTAAACAAGGTTGGCCCGTACAATAACCCGCAAGAAACTTACAACTATTACAGCCTCCCATTTTGTCAGC
atttaat putative branch site (score: 12)
tgttatttaattttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gccatttctaaaaactaagcctactgatttgtaatcacactgagaacaacttttgtatgttagtaatcacttcatctacctgttatttaattttatgcagTACAAAGCTGAAGAAACGGTTAAACTCTGGGTAAACAAGGTTGGCCCGTACAATAACCCGCAAGAAACTTACAACTATTACAGCCTCCCATTTTGTCAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - -aaactaa
- - - - - - - - - -cctactg
- - - - - - - - - - - - - - - - - - - - - -gaacaac
- - - - - - - - - - - - - - - - - - - - - - - - - - ttgtatg