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...ctatcttatttctgcataatttatgatcctatcttgaagtaattctacattgtggcttgtatatattgtcgtactgaaatatcaatgtatcaattcatagGCATGGATAGATACCAAAGGGTGGAGAAGCCTCGCAATGAGACACCAATTAGTGAGAATGAGATCAGGATCACTGCACAGGGGAGGATGAGGAACTATAT
species | Oryza sativa |
transcript | LOC_Os11g06760.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TAGACGAAGCGGAGGAGGAGGCAGCGAGGCGAGGCGAGCCCAATCGGAAG GCATGGATAGATACCAAAGGGTGGAGAAGCCTCGCAATGAGACACCAATTAEST: gi|88339206|gb|CI633777.1|CI633777
genomic: TAGACGAAGCGGAGGAGGAGGCAGCGAGGCGAGGCGAGCCCAATCGGAAGgtgcgattcg ... caattcatagGCATGGATAGATACCAAAGGGTGGAGAAGCCTCGCAATGAGACACCAATTA
EST: TAGACGAAGCGGAGGAGGAGGCAGCGAGGCGAGGCGAGCCCAATCGGAAG GCATGGATAGATACCAAAGGGTGGAGAACCCTCGCAATGAGACACCAATTAEST: gi|88571169|gb|CI662542.1|CI662542
genomic: TAGACGAAGCGGAGGAGGAGGCAGCGAGGCGAGGCGAGCCCAATCGGAAGgtgcgattcg ... caattcatagGCATGGATAGATACCAAAGGGTGGAGAAGCCTCGCAATGAGACACCAATTA
EST: TAGACGAAGCGGAGGAGGAGGCAGCGAGGCGAGGCGAGCCCAATCGGAAG GCATGGATAGATACCAAAGGGTGGAGAAGCCTCGCAATGAGACACCAATTAEST: gi|38474993|gb|CF959126.1|CF959126
genomic: TAGACGAAGCGGAGGAGGAGGCAGCGAGGCGAGGCGAGCCCAATCGGAAGgtgcgattcg ... caattcatagGCATGGATAGATACCAAAGGGTGGAGAAGCCTCGCAATGAGACACCAATTA
EST: CCCAATCGGAAG GCATGGATAGATACCAAAGGGTGGAGAAGCCTCGCAATGAGACACCAATTAEST: gi|218484821|gb|FG946766.1|FG946766
genomic: CCCAATCGGAAGgtgcgattcg ... caattcatagGCATGGATAGATACCAAAGGGTGGAGAAGCCTCGCAATGAGACACCAATTA
EST: TAGGCGAAGCGGAGGAGGAGGCGGCGAGGCGAGGCGAGCCCAATCGGAAG GCATGGATAGATACCAAAGGGTGGAGAAGCCTCGCAATGAGACACCAATTAEST: gi|56157893|gb|C27653.2|C27653
genomic: TAGACGAAGCGGAGGAGGAGGCAGCGAGGCGAGGCGAGCCCAATCGGAAGgtgcgattcg ... caattcatagGCATGGATAGATACCAAAGGGTGGAGAAGCCTCGCAATGAGACACCAATTA
EST: TAGACGAAGCGGAGGAGGAGGCAGCGAGGCGAGGCGAGCCCAATCGGAAG GCATGGATAGATACCAAAGGGTGGAGAAGCCTCGCAATGAGACACCAATTAEST: gi|25799906|gb|CA755867.1|CA755867
genomic: TAGACGAAGCGGAGGAGGAGGCAGCGAGGCGAGGCGAGCCCAATCGGAAGgtgcgattcg ... caattcatagGCATGGATAGATACCAAAGGGTGGAGAAGCCTCGCAATGAGACACCAATTA
EST: TAGACGAAGCGGAGGAGGAGGCAGCGAGGCGAGGCGAGCCCAATCGGAAG GCATGGATAGATACCAAAGGGTGGAGAAGCCTCGCAATGAGACACCAATTAEST: gi|88305212|gb|CI652932.1|CI652932
genomic: TAGACGAAGCGGAGGAGGAGGCAGCGAGGCGAGGCGAGCCCAATCGGAAGgtgcgattcg ... caattcatagGCATGGATAGATACCAAAGGGTGGAGAAGCCTCGCAATGAGACACCAATTA
EST: TAGACGAAGCGGAGGAGGAGGCAGCGAGGCGAGGCGAGCCCAATCGGAAG GCATGGATAGATACCAAAGGGTGGAGAAGCCTCGCAATGAGACACCAATTAEST: gi|88339833|gb|CI649090.1|CI649090
genomic: TAGACGAAGCGGAGGAGGAGGCAGCGAGGCGAGGCGAGCCCAATCGGAAGgtgcgattcg ... caattcatagGCATGGATAGATACCAAAGGGTGGAGAAGCCTCGCAATGAGACACCAATTA
EST: TAGACGAAGCGGAGGAGGAGGCAGCGAGGCGAGGCGAGCCCAATCGGAAG GCATGGATAGATACCAAAGGGTGGAGAAGCCTCGCAATGAGACACCAATTAEST: gi|88309325|gb|CI655333.1|CI655333
genomic: TAGACGAAGCGGAGGAGGAGGCAGCGAGGCGAGGCGAGCCCAATCGGAAGgtgcgattcg ... caattcatagGCATGGATAGATACCAAAGGGTGGAGAAGCCTCGCAATGAGACACCAATTA
EST: TAGACGAAGCGGAGGAGGAGGCAGCGAGGCGAGGCGAGCCCAATCGGAAG GCATGGATAGATACCAAAGGGTGGAGAAGCCTCGCAATGAGACACCAATTAEST: gi|29677609|gb|CB673884.1|CB673884
genomic: TAGACGAAGCGGAGGAGGAGGCAGCGAGGCGAGGCGAGCCCAATCGGAAGgtgcgattcg ... caattcatagGCATGGATAGATACCAAAGGGTGGAGAAGCCTCGCAATGAGACACCAATTA
EST: TAGACGAAGCGGAGGAGGAGGCAGCGAGGCGAGGCGAGCCCAATCGGAAG GCATGGATAGATACCAAAGGGTGGAGAAGCCTCGCAATGAGACACCAATTAEST: gi|88338693|gb|CI644150.1|CI644150
genomic: TAGACGAAGCGGAGGAGGAGGCAGCGAGGCGAGGCGAGCCCAATCGGAAGgtgcgattcg ... caattcatagGCATGGATAGATACCAAAGGGTGGAGAAGCCTCGCAATGAGACACCAATTA
EST: TAGACGAAGCGGAGGAGGAGGCAGCGAGGCGAGGCGAGCCCAATCGGAAG GCATGGATAGATACCAAAGGGTGGAGAAGCCTCGCAATGAGACACCAATTA
genomic: TAGACGAAGCGGAGGAGGAGGCAGCGAGGCGAGGCGAGCCCAATCGGAAGgtgcgattcg ... caattcatagGCATGGATAGATACCAAAGGGTGGAGAAGCCTCGCAATGAGACACCAATTA
tacattgtggcttgtatatattgtcgtactgaaatatcaatgtatcaattcatagGCATGGATAGATACCAAAGGGTGGAGAAGCCTCGCAATGAGACACCAATTAGTGAGAATGAGATCAGGATCACTGCACAGGGGAGGATGAGGAACTATAT
aaatatcaatgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctatcttatttctgcataatttatgatcctatcttgaagtaattctacattgtggcttgtatatattgtcgtactgaaatatcaatgtatcaattcatagGCATGGATAGATACCAAAGGGTGGAGAAGCCTCGCAATGAGACACCAATTAGTGAGAATGAGATCAGGATCACTGCACAGGGGAGGATGAGGAACTATAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG