1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ttctgtctgtttatgaatctgatgaaaatctatctctgaattgcaattttgattcagtttcatcgaggtgtatgtgattgtgtttgctatttgggtgcagATGGTACCGGCTGAAGATTAGTGCGGCGTGGGAGGAGGATGAGTACAGGGCGCCCGTATCTCCTGCCAGGGTCGTGCAATATGAAG
species | Oryza sativa |
transcript | LOC_Os11g06690.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTGGCCATTTACATCGACCGCTTCCAAAAACTCGACCTGTTCCAGCAAGG ATGGTACCGGCTGAAGATTAGTGCGGCGTGGGAGGAGGATGAGTACAGGGCEST: gi|88308088|gb|CI647915.1|CI647915
genomic: GTGGCCATTTACATCGACCGCTTCCACAACCTCGACCTGTTCCAGCAAGGgtaaggaacg ... ttgggtgcagATGGTACCGGCTGAAGATTAGTGCGGCGTGGGAGGAGGATGAGTACAGGGC
EST: GTGGCCATTTACATCGACCGCTTCCACAACCTCGACCTGTTCCAGCAAGG ATGGTACCGGCTGAAGATTAGTGCGGCGTGGGAGGAGGATGAGTACAGGGCEST: gi|88693670|gb|CI737245.1|CI737245
genomic: GTGGCCATTTACATCGACCGCTTCCACAACCTCGACCTGTTCCAGCAAGGgtaaggaacg ... ttgggtgcagATGGTACCGGCTGAAGATTAGTGCGGCGTGGGAGGAGGATGAGTACAGGGC
EST: GTGGCCATTTACATCGACCGCTTCCACAACCTCGACCTGTTCCAGCAAGG ATGGTACCGGCTGAAGATTAGTGCGGCGTGGGAGGAGGATGAGTACAGGGCEST: gi|88695964|gb|CI739539.1|CI739539
genomic: GTGGCCATTTACATCGACCGCTTCCACAACCTCGACCTGTTCCAGCAAGGgtaaggaacg ... ttgggtgcagATGGTACCGGCTGAAGATTAGTGCGGCGTGGGAGGAGGATGAGTACAGGGC
EST: GTGGCCATTTACATCGACCGCTTCCACAACCTCGACCTGTTCCAGCAAGG ATGGTACCGGCTGAAGATTAGTGCGGCGTGGGAGGAGGATGAGTACAGGGCEST: gi|88388055|gb|CI590331.1|CI590331
genomic: GTGGCCATTTACATCGACCGCTTCCACAACCTCGACCTGTTCCAGCAAGGgtaaggaacg ... ttgggtgcagATGGTACCGGCTGAAGATTAGTGCGGCGTGGGAGGAGGATGAGTACAGGGC
EST: GTGGCCATTTACATCGACCGCTTCCACAACCTCGACCTGTTCCAGCAAGG ATGGTACCGGCTGAAGATTAGTGCGGCGTGGGAGGAGGATGAGTACAGGGC
genomic: GTGGCCATTTACATCGACCGCTTCCACAACCTCGACCTGTTCCAGCAAGGgtaaggaacg ... ttgggtgcagATGGTACCGGCTGAAGATTAGTGCGGCGTGGGAGGAGGATGAGTACAGGGC
attttgattcagtttcatcgaggtgtatgtgattgtgtttgctatttgggtgcagATGGTACCGGCTGAAGATTAGTGCGGCGTGGGAGGAGGATGAGTACAGGGCGCCCGTATCTCCTGCCAGGGTCGTGCAATATGAAG
ttttgat putative branch site (score: 3)
tattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctgtctgtttatgaatctgatgaaaatctatctctgaattgcaattttgattcagtttcatcgaggtgtatgtgattgtgtttgctatttgggtgcagATGGTACCGGCTGAAGATTAGTGCGGCGTGGGAGGAGGATGAGTACAGGGCGCCCGTATCTCCTGCCAGGGTCGTGCAATATGAAG
- ctgtctg
- - - - - - - - - ctgatga
- - - - - - - - - - - - - - - - - - - aattgca
- - - - - - - - - - - - - - - - - - - - - - - - -tgattca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgtatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttgc